G961502


Basic Information

Item Value
gene id G961502
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27632166 ~ 27632484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096001
GCAAGATATAATAGCTGTGATGACTTGTTGAGTAGTCATAGATATCACTGAAAACCCCTTTAGTAATTGGGGCTTTTGTTTGCATGGTGGTATTGTGAAATTGGGGTGTAATTTGTCTTGATCACCCAATGAGGCACTACTCTTAATATTTATTCTTCCTTTTTCTTCAAGGAAGCAGATGTTCTTCTAAGGGACACCCTAGAGGAAGCAAGGTGGTGCAAACTCCAACCACTTAAAGGCACTGTTTCCCTCCCTAGTGTAATTGGTATGGACGGGGAAGACCGCATTGCAACCCTTAAAGAACTACGGTTGTGTGATG

Function

NR:

description
HMG domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096001 True 319 lncRNA 0.42 1 27632166 27632484

Neighbor

gene id symbol gene type direction distance location
LOC110536609 NA coding upstream 34566 27593126 ~ 27597600 (+)
bambia LOC106578551 coding upstream 219253 27409002 ~ 27412913 (+)
waca LOC106590019 coding upstream 230537 27357766 ~ 27401629 (+)
rab18a LOC106578546 coding upstream 808344 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 822202 26760317 ~ 26809964 (+)
mtpap LOC106578552 coding downstream 106897 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 177565 27810049 ~ 27845341 (+)
svila LOC106578556 coding downstream 234542 27867026 ~ 28011031 (+)
LOC110535556 LOC106578558 coding downstream 499638 28132122 ~ 28249912 (+)
LOC110536610 NA coding downstream 859178 28491651 ~ 28492829 (+)
G961364 NA non-coding upstream 211042 27420918 ~ 27421124 (+)
G961357 NA non-coding upstream 225960 27405995 ~ 27406206 (+)
G961345 NA non-coding upstream 274446 27357510 ~ 27357720 (+)
G960911 NA non-coding upstream 448126 27179188 ~ 27184040 (+)
G961514 NA non-coding downstream 17732 27650216 ~ 27650418 (+)
G961739 NA non-coding downstream 52806 27685290 ~ 27685530 (+)
G961769 NA non-coding downstream 82658 27715142 ~ 27715487 (+)
G961863 NA non-coding downstream 195977 27828461 ~ 27828660 (+)
G961870 NA non-coding downstream 201626 27834110 ~ 27834331 (+)
G960816 armc4 other upstream 703139 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 834872 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2836430 24794600 ~ 24795736 (+)
G957942 NA other upstream 3030513 24600471 ~ 24601653 (+)
G961864 NA other downstream 196262 27828746 ~ 27829177 (+)
G961984 NA other downstream 264682 27897166 ~ 27941575 (+)
G962100 NA other downstream 595044 28227528 ~ 28229401 (+)

Expression


Co-expression Network