G961930 (LOC106578555)


Basic Information

Item Value
gene id G961930
gene name LOC106578555
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27835966 ~ 27836768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096457
AGCCCCTGTGACCTCCATGGCCCCCTCTCATAAGAGGAGCTCTCTTGGGGGGATACGATGGGGGAGGGATATAACCCGGAGGATCCGTGCCGGACCCTCCATCTTGTGAATAATAGTCCAGCCTGGGGTCACCCATcctggggtgggggaggggggttctGTCCCTGGCCTGGGGCTGTGGAGTTGATGCTGCTGCTGGGTCTCCTGACAGCGTCTCAGAACTCCCCCGGGTCTGCTGGTGCACCTCGTAGGACGGAGGCCGCAGGGGACGGCTGAACCGGGTCTTTGGTACCAGAGAGGCCTGGCTAAGCTGGCTGGCCATACTAGCCTGACTGGATGGTCTGCTGTCATTCTCAGACCACCtgtccctgtcccctgtcccagCCTGGTTGTGGTTATATCTGTTGTAAGGGTCGTGATGGGACCCTGGATGGCCGTTGACCTTCCTGTACACGTCCTGCCCAGACCCAACAGACCCAGACATGGCCACGTATTGCAGGCTGTCCGGCGGCAGCATTCGGGGCAGAGACTGGGACTTCCCTTTGTTCCTGGGCCCCATTACAACCACAGCGCCATCCGGTGTCCGGAGGTGGCGCTGCTGCAGTTGCTGCTGCTCCTGAGCCCGAGCCCAACTGTCGCCCTCGCTGTCCGAGAGCTGGCGGGCGAAGCTGACCACGGCGGGTCGCCACTCGTCCGTGCCCAGGCTCTGACACTTCCTCTCCACGGCAGCCGTCGTCCACTGCTGCAGCGCTGCCTCTCTCTGCTTGGAGCGGGACTGGGCCTGGGACTGGACTGCCCAACGC
>TU1096458
AGCCCCTGTGACCTCCATGGCCCCCTCTCATAAGAGGAGCTCTCTTGGGGGGATACGATGGGGGAGGGATATAACCCGGAGGATCCGTGCCGGACCCTCCATCTTGTGAATAATAGTCCAGCCTGGGGTCACCCATcctggggtgggggaggggggttctGTCCCTGGCCTGGGGCTGTGGAGTTGATGCTGCTGCTGGGTCTCCTGACAGCGTCTCAGAACTCCCCCGGGTCTGCTGGTGCACCTCGTAGGACGGAGGCCGCAGGGGACGGCTGAACCGGGTCTTTGGTACCAGAGAGGCCTGGCTAAGCTGGCTGGCCATACTAGCCTGACTGGATGGTCTGCTGTCATTCTCAGACCACCtgtccctgtcccctgtcccagCCTGGTTGTGGTTATATCTGTTGTAAGGGTCGTGATGGGACCCTGGATGGCCGTTGACCTTCCTGTACACGTCCTGCCCAGACCCAACAGACCCAGACATGGCCACGTATTGCAGGCTGTCCGGCGGCAGCATTCGGGGCAGAGACTGGGACTTCCCTTTGTTCCTGGGCCCCA
>TU1096459
ggggttctGTCCCTGGCCTGGGGCTGTGGAGTTGATGCTGCTGCTGGGTCTCCTGACAGCGTCTCAGAACTCCCCCGGGTCTGCTGGTGCACCTCGTAGGACGGAGGCCGCAGGGGACGGCTGAACCGGGTCTTTGGTACCAGAGAGGCCTGGCTAAGCTGGCTGGCCATACTAGCCTGACTGGATGGTCTGCTGTCATTCTCAGACCACCtgtccctgtcccctgtcccagCCTGGTTGTGGTTATATCTGTTGTAAGGGTCGTGATGGGACCCTGGATGGCCGTTGACCTTCCTGTACACGTCCTGCCCAGACCCAACAGACCCAGACATGGCCACGTATTGCAGGCTGTCCGGCGGCAGCATTCGGGGCAGAGACTGGGACTTCCCTTTGTTCCTGGGCCCCA

Function

NR:

description
uncharacterized protein LOC110535552

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096457 False 803 TUCP 0.64 1 27835966 27836768
TU1096458 False 558 lncRNA 0.61 1 27836211 27836768
TU1096459 True 406 lncRNA 0.62 1 27836211 27836616

Neighbor

gene id symbol gene type direction distance location
LOC110535550 LOC106578553 coding downstream 97027 27726584 ~ 27739184 (-)
LOC110535548 NA coding downstream 174965 27653032 ~ 27661250 (-)
LOC110536594 LOC106578549 coding downstream 483809 26998789 ~ 27352402 (-)
LOC118937384 armc4 coding downstream 804113 27011843 ~ 27032098 (-)
odad2 armc4 coding downstream 865663 26901986 ~ 26970548 (-)
LOC110535555 LOC106578557 coding upstream 205876 28042644 ~ 28110417 (-)
LOC110535557 LOC106578559 coding upstream 429582 28266350 ~ 28361739 (-)
LOC110535558 LOC106578560 coding upstream 526025 28362793 ~ 28391391 (-)
LOC110535559 LOC106578561 coding upstream 590436 28427204 ~ 28488396 (-)
LOC110535562 LOC106578563 coding upstream 672046 28508814 ~ 28543553 (-)
G961929 NA non-coding downstream 433 27835544 ~ 27835778 (-)
G961925 LOC106578555 non-coding downstream 9073 27826485 ~ 27827138 (-)
G961924 NA non-coding downstream 10250 27825651 ~ 27825961 (-)
G961909 NA non-coding downstream 25956 27809959 ~ 27810255 (-)
G961908 NA non-coding downstream 27695 27808281 ~ 27808516 (-)
G962549 NA non-coding upstream 141644 27978412 ~ 27979687 (-)
G962551 NA non-coding upstream 144742 27981510 ~ 27982313 (-)
G962552 NA non-coding upstream 147788 27984556 ~ 28035276 (-)
G962555 NA non-coding upstream 148807 27985575 ~ 27989378 (-)
G962570 NA non-coding upstream 181564 28018332 ~ 28019029 (-)
G961041 LOC107713907 other downstream 1033385 26737174 ~ 26802826 (-)
G960344 LOC106578541 other downstream 1434660 26357045 ~ 26401551 (-)
LOC110535540 LOC106578540 other downstream 2013164 25818677 ~ 25833045 (-)
G959058 NA other downstream 2461913 25373845 ~ 25374298 (-)
G958946 NA other downstream 2656498 25179384 ~ 25179713 (-)
G962982 NA other upstream 884878 28721646 ~ 28722303 (-)
G966663 LOC100194703 other upstream 3554268 31391036 ~ 31391344 (-)
G967535 NA other upstream 4214192 32050960 ~ 32053193 (-)
LOC110535581 LOC106578582 other upstream 4652428 32489195 ~ 32549643 (-)
G968868 NA other upstream 4829984 32666752 ~ 32667490 (-)

Expression


Co-expression Network