G961953


Basic Information

Item Value
gene id G961953
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27859358 ~ 27860622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096483
GTCATGGATGgaccttggagggcataggcccacccacttgggagccaggcccagccgccagaatgagtttttccccacaaaagggctttattacagacagaaatactcctcagtttcatcagctgtccgggtggctggtctcagacgatcccgcaggtgaagaagccggatgtggaggtcctgggctggcatggttacacatggtctgcggttgtgaggccggttggatgtactgccaaattctttaaatcaacgttggaggcggcttatggtagagaaattaacattaaattctctggcaacagctctggtggacattcctgcagtcagcatgctaattgtacgctcccttaaaacttgagatatctgtggaattgtgttgtggccttgtattgtccccagcacaaggtgcacctgtataatgatcatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttggtgaaggagaaatgctcacttacagtgatgtaaacaaatttgtgcacaacatttcagagaaataagctttttgtgcaaatgaaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttaattgttgtgtttatattttcttTCGGTTTaaaataaatgtgacaacatggTGAGCACGTGAAAAGGATCTCATGTGAAATAAATAGGACAGCATGGGAATGCAAACGTTTTTCACATGTGAAGATACAATTCCACATGTGAGAGTTAGGTTTTCACATGTGAACGTTTTTTACATGTGAAAAGGTGGTGATAACATGTGGAGTGTTCCAAAAACGTTCACAGTATCTTGGAGTGTCTCAGCTTGTCTGGTTCCCTTTTCTCTTCATGCTCAGACTCCTTGGGTTCCATCCATGCAACGTCATTATACATAGCTGAAAACCTCAAATCCATTGTTTGTGGGACACATATGTTTCTTGTGTATTAAATGCCAAATGGAATTGCTATCCAATCGCTACTTAGCCGCATGAGAGCCATAGCTTTGAAGGCTGACCTTATTTACGGcatctaattgagtgtatttctTACAGATTTAGAAACACAGGAaaagtcccaaatgccaccctattccctacatagtgcactacttttgactagagccctatgtgCACTGgtcaatatagggaatagggtggcatttgggacgctCCCTTAGAAAGACAGTGAATAGATCTCATGATAAGTGACAGTTGAGAAAATACTATTTAAT

Function

NR:

description
NEDD8-conjugating enzyme UBE2F-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096483 True 1265 lncRNA 0.43 1 27859358 27860622

Neighbor

gene id symbol gene type direction distance location
jcada LOC106578555 coding upstream 14017 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 95188 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 261758 27593126 ~ 27597600 (+)
bambia LOC106578551 coding upstream 446445 27409002 ~ 27412913 (+)
waca LOC106590019 coding upstream 457729 27357766 ~ 27401629 (+)
svila LOC106578556 coding downstream 6404 27867026 ~ 28011031 (+)
LOC110535556 LOC106578558 coding downstream 271500 28132122 ~ 28249912 (+)
LOC110536610 NA coding downstream 631040 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 638488 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 3228242 31088864 ~ 31169983 (+)
G961942 NA non-coding upstream 6724 27852404 ~ 27852634 (+)
G961870 NA non-coding upstream 25027 27834110 ~ 27834331 (+)
G961863 NA non-coding upstream 30698 27828461 ~ 27828660 (+)
G961769 NA non-coding upstream 143871 27715142 ~ 27715487 (+)
G961739 NA non-coding upstream 173828 27685290 ~ 27685530 (+)
G961958 NA non-coding downstream 2371 27862993 ~ 27863456 (+)
G962001 NA non-coding downstream 63903 27924525 ~ 27982293 (+)
G962043 LOC106578557 non-coding downstream 182022 28042644 ~ 28053247 (+)
G962051 NA non-coding downstream 196466 28057088 ~ 28070019 (+)
G962152 NA non-coding downstream 349746 28210368 ~ 28211512 (+)
G961864 NA other upstream 30181 27828746 ~ 27829177 (+)
G960816 armc4 other upstream 930331 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 1062064 26713625 ~ 26797294 (+)
G961984 NA other downstream 36544 27897166 ~ 27941575 (+)
G962100 NA other downstream 366906 28227528 ~ 28229401 (+)
G965838 NA other downstream 2958216 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 5523421 33383589 ~ 33386375 (+)

Expression


Co-expression Network