G962001


Basic Information

Item Value
gene id G962001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27924525 ~ 27982293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096579
TTCCACGCTCGTATACTGCTTCAGATGGATTATACCACAGATGAATGTGGTGAAGTGTGAAAAGCTTTAGAATAGGTCAAATTGCTATTTGggtagttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtggccctgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtggccctgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtggccctgtgtgtgtgtgtgtgtgtgtgtggccctgcgtgtgtgtgtgtggccctgcgtgtgtgtgtgtggccctgcgtgtgtgtgtgtgtggccctgcgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096579 True 902 lncRNA 0.57 2 27924525 27982293

Neighbor

gene id symbol gene type direction distance location
jcada LOC106578555 coding upstream 79184 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 160355 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 326925 27593126 ~ 27597600 (+)
bambia LOC106578551 coding upstream 511612 27409002 ~ 27412913 (+)
waca LOC106590019 coding upstream 522896 27357766 ~ 27401629 (+)
LOC110535556 LOC106578558 coding downstream 149829 28132122 ~ 28249912 (+)
LOC110536610 NA coding downstream 509369 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 516817 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 3106571 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3771576 31753869 ~ 31790306 (+)
G961958 NA non-coding upstream 61069 27862993 ~ 27863456 (+)
G961953 NA non-coding upstream 63903 27859358 ~ 27860622 (+)
G961942 NA non-coding upstream 71891 27852404 ~ 27852634 (+)
G961870 NA non-coding upstream 90194 27834110 ~ 27834331 (+)
G961863 NA non-coding upstream 95865 27828461 ~ 27828660 (+)
G962043 LOC106578557 non-coding downstream 60351 28042644 ~ 28053247 (+)
G962051 NA non-coding downstream 74795 28057088 ~ 28070019 (+)
G962152 NA non-coding downstream 228075 28210368 ~ 28211512 (+)
G962159 NA non-coding downstream 249970 28232263 ~ 28232466 (+)
G962163 NA non-coding downstream 252996 28235289 ~ 28235532 (+)
G961864 NA other upstream 95348 27828746 ~ 27829177 (+)
G960816 armc4 other upstream 995498 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 1127231 26713625 ~ 26797294 (+)
G962100 NA other downstream 245235 28227528 ~ 28229401 (+)
G965838 NA other downstream 2836545 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 5401750 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5476068 33411705 ~ 33473890 (+)

Expression


Co-expression Network