G962043 (LOC106578557)


Basic Information

Item Value
gene id G962043
gene name LOC106578557
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28042644 ~ 28053247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096621
TGTagttgatgtattttattgtgagATGGGGAGTcatagaaaaaacaaacaaaaactatCACTATAAAAATGATCATGGATTAAAACAAGTACATATAAAAGAGGTTGTGGCCTGGACGTAGTATACATACAAAGTAACAAATTGGCACAaataaaacacaacaaaatgtcaaTATTATTTTGGCTTGGCAAAAAGGACAGGTTCATGGTTAAGGGTCATCCTTCAATACAACAGCACACTCATGCTATTAGACATACAGTTAGTTCTCAAAACGTTTCAGTAGCTTCATATTAAAGTGGGGCAAAAGGTCAAAACTAACATGAGAATGAATGGATTTAGAAAGGGAACCAATTCCAATTTCAGGCTTGTGGGGTGTGTTGACAACTTTAGATGTATTTGCGTTCTAAAACATACTTCAAAATGCcagagctttttttttttagttcCCACCTTTGTTGTAGTCAGCttacatttgaaatgattttcATACTAAAATATATTATTGTATTAATACAAACTACAGTAATGTACACTACATTGTGTAATAAATAACCATAaggaaatataaaataaaaaaaaataacacataAATATAAAATGTTTCTAGAACTAAACAGATAACCCATATCATTGGGAATGGGGAAAAATACTGCCTTTTCTgaaaacatacagtacacacatttgAACATGAACATACAAAACAATCCAACAACAAAATAATACTGACAGGTAAAAAATATTGTCTGAATAACCATTATGGGATCATATTTGCCTACTTTTGTTACCTGAAGAGAGCGCGAGCGTTTCACAAGTGATAAACAAGTGCACTGGAACTGGACTGGGGGGGAATTTATACATTTCAAGGCAGGAAATATTTCAAAATCATGTTTCATCGTTCCGTTAAAACATGTGCATTGTAAGTCCTTTTAGTCTTTGATTGCTCTGATTATAAAAGAGGCAGATCTTTTTTTTATCTCAAATATGTAATTCATGTCTAAATTATAATTCATGGTAACGCTATAATCTACAACATCAGGACTAGTGGTAGTGAGCCAAAATCAACAGGATATCGGCTGAAAGAGTTGACATGTTCGAGCTGCTATCAAATCTGGGCCTCGACACAACCTGACAACAGCTGCTGAGGAAAAACAGCAGTATTCAATGGCACTTTTGATACGCTTCATGTCTTCTTGTTTTGCATAAGGCTGGGAGTGGGAATAGGATTCAGGGGGCAAATGATCTCACGATTGTTCTTCTTTCTTATTCTGCTTGATCTGATTCTGTACATGTAACACTGATGACAACAGATTGATGAAATGAACAAACGAACGAACAGAACATTTTAGAGCAATGTATCAATGCAGACTCCTTCGATACCCCCCTTGTCTTCTTCTTCATCTATAAGGTAATCAACTACTGGAATATCATCATGGATGAACTCATCTCACAATCGTTTTCTTCTTTAAGGCTCACATTCCATGTACAACAAAAGGTATGCTAACATCACCAGCTAACATGCTGATGATGTATACTGTAAGTCTAGTGCCATAACACTGAAGGGTAGACAACACCACTGTTAGTGCCGTAAGTAAACCAAGCCACTTGTAGTGCACAGGATCTTTTTTCCTCCAACTTAATAAAatactgattttttttttgttcattgGCAATAAAAAGATATAGAAATCTCTCCTAACTGTACAGGTTTTTAAAGGTTAAAATATGAGGGATAAAATTAGTAACACTGATAAAAAGAAATGACCCAAGGTTGATTTAGTAATAAAACATTATCTAAAACGTGTCGGCTCTAGCTTCCAAAGTCCGTATAAtgcattttttgttgttaaactttgtgttttagttttttacaaatacattttctaACACTGAAAATGTTTCTCCTTCTGTGGAAAAAGCCACTAGTATTTTTTCAGGCACACCTGGATTCATACACAGTAGTGAACTGAAATGCAGCGTCCGTCAGAGCAATCCAAACTTTAGCTCTCTATCCTTTCCCCCAATGTCATGGAGAAAAATGATCCTTCCATTTCATTAAGGAAGAAGCACGGGTCTGGTTCCTCCCTGTTTTAATTCAGatctcctttctctcctgtcGGTGTCTGGTTCTTGTCTTCTGAAACAGTGTTCCTGTTTGTTTCACCTTCATTCTCTTTCATGACCTCACTTTCCTCCGCCGCCCTCGACCCTGACTCTTCCTTGTCCTCCGAGGTCAATCCTTTCTCTGTGTCCATTGTGTCTTCCTTCTCAGACAGctcctcctcgtcctccctgGTGCTGCTCCCTCGCTCGTCAGAGTCCAGGTGGGAGGAGTGATGGCATAAATGGTCCCGCTGGGCAGCTGAGTGGTCATGATACTGATGGGGTTGGCACTTTGTGGGTTGGCGGTGTACAGGGACACAGGTTGACTAGTCACGTGGTGGCCAGCGACGCCGGCGAGCGGAAGTTCTTTCTTTGTTGTGCAAGTCTTCGTCAAGTTCAGGGGTTCGTCCTGATGGGAGTAAACAGAGGCGTGGTAAGTGGCGGCGGCTGCGGCCTCCTCTCGGGTGGGCTTTGGTAGCGACAGGTCCAGAGGGCCATCAGTGCTGTCTGAggaggagggtttggctgggacGGGCCCCCCGGCGGTCAGGTTTAGTGGTGTGGGGGAGGCTGGGGAGCGCATGGAGCCGTTAACCTCAGCCGGAGTGGCCTCGGCTGGGCCGGACTGCATCATGGTGGGACCCTCTGTGTCCTGCTCTGGTCTTACCTTAGGGGACACAACTGTGGCCCCAGGACTCTCAGACAAGGGTCCCTCTTCCTCAGACGGAGGTGTCGGAGCTCCTAGTGAGACCTGACTGCTCTGCATCTTGTCGAACCACTTCTTGACCACGTCGGTGGGCAGGCTGACTGAATCTGAGATCTTGCTGAGCTCCTCCTTGGTTGGCTCAGCGTTTAGGGCGAAGTAGGCCTTGAGGAGGGACAGGAGGTTCTTGGGCTGGTTCCCGACCCCCTCGGACAGTAACGAGGCGATGGCAGACTCTGATTTGTCCCCATTGATCCTGAGGCCTGAGGCCTTCTTACAGTGCTCGAGTGCGTGGAGCACGTCCAGACCACCGGGGCAGTCGCCACAGAGCAGACAGGTCTTAGtggtctcctccccctcctccttctcgttttcctcttccatcttctcctctttGCTCCTGGGGGGCCTGCTGAGTGTCAGGTCCTCTGGGAGTCTCTGCTGGGCCTTGCTGCAGGGCTCTATAGCAACCTCGGACAGGGGCTGAGCCTGGGGCTGGCCTGGCATTGTAGCCAGGGTCTGAGGTTCCTTCTTCAGGTTCTGGGCAGTGAGCTGGGTCTGGCTGGGATCGAGGCTGTAATTGATGATGATCTTGGTGGCGTTGCCGTCCTGACCGATGATGGGGAGACTGATGGCTGAGATGAGCTGCTGGTGAGGAACACCCGTCGCCCCTGTGCCGGTCCCCGCTGCCTTGGCATTGTTCTCCAACATCTGTCTGATCATGTTACCGTCC
>TU1096623
TGTagttgatgtattttattgtgagATGGGGAGTcatagaaaaaacaaacaaaaactatCACTATAAAAATGATCATGGATTAAAACAAGTACATATAAAAGAGGTTGTGGCCTGGACGTAGTATACATACAAAGTAACAAATTGGCACAaataaaacacaacaaaatgtcaaTATTATTTTGGCTTGGCAAAAAGGACAGGTTCATGGTTAAGGGTCATCCTTCAATACAACAGCACACTCATGCTATTAGACATACAGTTAGTTCTCAAAACGTTTCAGTAGCTTCATATTAAAGTGGGGCAAAAGGTCAAAACTAACATGAGAATGAATGGATTTAGAAAGGGAACCAATTCCAATTTCAGGCTTGTGGGGTGTGTTGACAACTTTAGATGTATTTGCGTTCTAAAACATACTTCAAAATGCcagagctttttttttttagttcCCACCTTTGTTGTAGTCAGCttacatttgaaatgattttcATACTAAAATATATTATTGTATTAATACAAACTACAGTAATGTACACTACATTGTGTAATAAATAACCATAaggaaatataaaataaaaaaaaataacacataAATATAAAATGTTTCTAGAACTAAACAGATAACCCATATCATTGGGAATGGGGAAAAATACTGCCTTTTCTgaaaacatacagtacacacatttgAACATGAACATACAAAACAATCCAACAACAAAATAATACTGACAGGTAAAAAATATTGTCTGAATAACCATTATGGGATCATATTTGCCTACTTTTGTTACCTGAAGAGAGCGCGAGCGTTTCACAAGTGATAAACAAGTGCACTGGAACTGGACTGGGGGGGAATTTATACATTTCAAGGCAGGAAATATTTCAAAATCATGTTTCATCGTTCCGTTAAAACATGTGCATTGTAAGTCCTTTTAGTCTTTGATTGCTCTGATTATAAAAGAGGCAGATCTTTTTTTTATCTCAAATATGTAATTCATGTCTAAATTATAATTCATGGTAACGCTATAATCTACAACATCAGGACTAGTGGTAGTGAGCCAAAATCAACAGGATATCGGCTGAAAGAGTTGACATGTTCGAGCTGCTATCAAATCTGGGCCTCGACACAACCTGACAACAGCTGCTGAGGAAAAACAGCAGTATTCAATGGCACTTTTGATACGCTTCATGTCTTCTTGTTTTGCATAAGGCTGGGAGTGGGAATAGGATTCAGGGGGCAAATGATCTCACGATTGTTCTTCTTTCTTATTCTGCTTGATCTGATTCTGTACATGTAACACTGATGACAACAGATTGATGAAATGAACAAACGAACGAACAGAACATTTTAGAGCAATGTATCAATGCAGACTCCTTCGATACCCCCCTTGTCTTCTTCTTCATCTATAAGGTAATCAACTACTGGAATATCATCATGGATGAACTCATCTCACAATCGTTTTCTTCTTTAAGGCTCACATTCCATGTACAACAAAAGGTATGCTAACATCACCAGCTAACATGCTGATGATGTATACTGTAAGTCTAGTGCCATAACACTGAAGGGTAGACAACACCACTGTTAGTGCCGTAAGTAAACCAAGCCACTTGTAGTGCACAGGATCTTTTTTCCTCCAACTTAATAAAatactgattttttttttgttcattgGCAATAAAAAGATATAGAAATCTCTCCTAACTGTACAGGTTTTTAAAGGTTAAAATATGAGGGATAAAATTAGTAACACTGATAAAAAGAAATGACCCAAGGTTGATTTAGTAATAAAACATTATCTAAAACGTGTCGGCTCTAGCTTCCAAAGTCCGTATAAtgcattttttgttgttaaactttgtgttttagttttttacaaatacattttctaACACTGAAAATGTTTCTCCTTCTGTGGAAAAAGCCACTAGTATTTTTTCAGGCACACCTGGATTCATACACAGTAGTGAACTGAAATGCAGCGTCCGTCAGAGCAATCCAAACTTTAGCTCTCTATCCTTTCCCCCAATGTCATGGAGAAAAATGATCCTTCCATTTCATTAAGGAAGAAGCACGGGTCTGGTTCCTCCCTGTTTTAATTCAGatctcctttctctcctgtcGGTGTCTGGTTCTTGTCTTCTGAAACAGTGTTCCTGTTTGTTTCACCTTCATTCTCTTTCATGACCTCACTTTCCTCCGCCGCCCTCGACCCTGACTCTTCCTTGTCCTCCGAGGTCAATCCTTTCTCTGTGTCCATTGTGTCTTCCTTCTCAGACAGctcctcctcgtcctccctgGTGCTGCTCCCTCGCTCGTCAGAGTCCAGGTGGGAGGAGGTGGGCCTGCTGTCTGACTGCTCCTGCTGCTCCCCTCCAAGGCCCAGGGCCAACCCCACAGggctctccatctcctcctccagcacctcctcCCCTATACCTCCTTGACTTCCTTCCAGCGCCTCTTTCTTGCAATAGGAGTAACGGTGGTTCATGTGCTGGGAGTAGGAGCCCGAGTGAGAGAAGCGCTTGCCACACTTGTCGCACTGGTAGGGTTTCTCCCCAGAGTGGAGACGCATGTGTTCTATCAAGTGGTGCTTGTGTTTGAAGGCCTTCCTGCAGATACCGCACTCGTGGGG

Function

NR:

description
zinc finger E-box-binding homeobox 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096621 False 3537 lncRNA 0.45 3 28042644 28053247
TU1096623 True 2631 lncRNA 0.39 2 28042644 28045682

Neighbor

gene id symbol gene type direction distance location
svila LOC106578556 coding upstream 31613 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 197303 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 278474 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 445044 27593126 ~ 27597600 (+)
bambia LOC106578551 coding upstream 629731 27409002 ~ 27412913 (+)
LOC110535556 LOC106578558 coding downstream 78875 28132122 ~ 28249912 (+)
LOC110536610 NA coding downstream 438415 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 445863 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 3035617 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3700622 31753869 ~ 31790306 (+)
G962001 NA non-coding upstream 60351 27924525 ~ 27982293 (+)
G961958 NA non-coding upstream 179188 27862993 ~ 27863456 (+)
G961953 NA non-coding upstream 182022 27859358 ~ 27860622 (+)
G961942 NA non-coding upstream 190010 27852404 ~ 27852634 (+)
G961870 NA non-coding upstream 208313 27834110 ~ 27834331 (+)
G962051 NA non-coding downstream 3841 28057088 ~ 28070019 (+)
G962152 NA non-coding downstream 157121 28210368 ~ 28211512 (+)
G962159 NA non-coding downstream 179016 28232263 ~ 28232466 (+)
G962163 NA non-coding downstream 182042 28235289 ~ 28235532 (+)
G962166 NA non-coding downstream 185268 28238515 ~ 28238743 (+)
G961984 NA other upstream 101069 27897166 ~ 27941575 (+)
G961864 NA other upstream 213467 27828746 ~ 27829177 (+)
G960816 armc4 other upstream 1113617 26928676 ~ 26929027 (+)
G962100 NA other downstream 174281 28227528 ~ 28229401 (+)
G965838 NA other downstream 2765591 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 5330796 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5405114 33411705 ~ 33473890 (+)

Expression


Co-expression Network