XLOC_028703 (spi2)


Basic Information

Item Value
gene id XLOC_028703
gene name spi2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17801328 ~ 17805128 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055649
GTtgcattttcaaatttattttctgGTATATCAGCTATTGTGTCATTGCAAGCCAAATACTTGGTAGATCATTATTTTGTGTGagatcaaaatatatatttcttcttACCAGAACAGTCCGCAGGATTATCAGACGGATTTGGAGGTGATTCTGGAATTTCTAGAGGAGCACTACAGGCAGGAATCTCACAGAAAAGCTCTATGGGACATGACGGATCTCTCTGTCACATCATCCAGTGGCTCTGTGGACACTTCTGCAGAGAAACGGCCAGATGAGGAGAATTTCATCAAAGTTTCAGGACAGGAAACTCAGGTCATGGAATCTTTGCCCAAAGCAAACATATCGGACGGGCGAGGAATAAACACCCTAAAGGCAGCAGAAAGCCCTTTAATTCTGCATGCGACACCTGAAAAGCGTGTCAAGTCACTGCCCAGCAGTACAACTGCAGAGAAAGGGAAAAAGCTGCGTCTTTTTCACTTCTTATTTGAGATGCTGGAGGATCCAGATATGGCGCATTGTGTATCCTGGGTACCAGCTTCGGTTGGTGTTTTCTGCTTTTCTGCTAAAAACAAGGAGCATGTGGCGGAGCTGTGGGGTCAAAGGAAGGGGAATCGAATGCCTATGACCTACCAGAAAATGTCCCGGGCCTTGCGAAATTATAGCCGCTCGGGGGAGATCATTAAAGTGAAAAAGAAACTGACTTACCAGTTCAGTGTCACTACACTTTCTACTTTACAGAGCCAGCGTGGTGCAAAGAAAGCAGCGTGAGGATCCAAATGAGAGATGAATGACCTCATTATTTCGCACTCTTGTGATATCTTAATTGCCTTGGTAAGAGGAGGAGGGTTAAATTGGTTTCTAATTTTCTTTCTTGATGGTCAGCCGATTATGCTCAGCGAAAAGATGACATTTAGGATTTGTACTTGTTCTGCACTTTGAATATCCCCATGCagataaaaagtctttaaaatgtattggtgtatgttttatttttattttttttacacttgcAAAAGTTATGTACtaaccaaaacaaataaaaacagaccatTATCTCCTACTTCCCGCATTGTTCACTTGTCTCCAGTAGGTGGCAAAGCTGatacactgcttttattctgattGTGACTTCTTTGCTACTGTTgtatttcttttgtgtgtgtttttattctaGGTTACAACTTAAATCTGAATTATCAATTAGCTGGCATAAAAACACATTGACcatttta
>TCONS_00055650
GTGACGGATCTCTCTGTCACATCATCCAGTGGCTCTGTGGACACTTCTGCAGAGAAACGGCCAGATGAGGAGAATTTCATCAAAGTTTCAGGACAGGAAACTCAGGTCATGGAATCTTTGCCCAAAGCAAACATATCGGACGGGCGAGGAATAAACACCCTAAAGGCAGCAGAAAGCCCTTTAATTCTGCATGCGACACCTGAAAAGCGTGTCAAGTCACTGCCCAGCAGTACAACTGCAGAGAAAGGGAAAAAGCTGCGTCTTTTTCACTTCTTATTTGAGATGCTGGAGGATCCAGATATGGCGCATTGTGTATCCTGGGTACCAGCTTCGGTTGGTGTTTTCTGCTTTTCTGCTAAAAACAAGGAGCATGTGGCGGAGCTGTGGGGTCAAAGGAAGGGGAATCGAATGCCTATGACCTACCAGAAAATGTCCCGGGCCTTGCGAAATTATAGCCGCTCGGGGGAGATCATTAAAGTGAAAAAGAAACTGACTTACCAGTTCAGTGTCACTACACTTTCTACTTTACAGAGCCAGCGTGGTGCAAAGAAAGCAGCGTGA

Function

symbol description
spi2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-377 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000087438

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055649 False 1233 mRNA 0.41 4 17801328 17805128
TCONS_00055650 True 561 mRNA 0.48 3 17801792 17803784

Neighbor

gene id symbol gene type direction distance location
XLOC_028701 mybpc1 coding downstream 8176 17726841 ~ 17793152 (-)
XLOC_028702 BX890572.1 coding downstream 63516 17736443 ~ 17737812 (-)
XLOC_028700 chpt1 coding downstream 76320 17707008 ~ 17725008 (-)
XLOC_028698 BX890572.2 coding downstream 120835 17647547 ~ 17680493 (-)
XLOC_028699 dram1 coding downstream 131447 17662413 ~ 17669881 (-)
XLOC_028704 spic coding upstream 2709 17807837 ~ 17812131 (-)
XLOC_028705 dnajb9b coding upstream 16262 17821390 ~ 17823424 (-)
XLOC_028706 avpr2l coding upstream 30970 17836098 ~ 17838179 (-)
XLOC_028707 NA coding upstream 69943 17875071 ~ 17882930 (-)
XLOC_028708 anks1b coding upstream 81710 17886838 ~ 18202291 (-)
XLOC_028696 NA non-coding downstream 171884 17571295 ~ 17629444 (-)
XLOC_028690 NA non-coding downstream 585105 17113379 ~ 17216223 (-)
XLOC_028684 NA non-coding downstream 976772 16763705 ~ 16824556 (-)
XLOC_028673 NA non-coding downstream 1487384 16295524 ~ 16313944 (-)
XLOC_028709 BX901882.1 non-coding upstream 384278 18189406 ~ 18189520 (-)
XLOC_028719 dre-let-7b non-coding upstream 848020 18653148 ~ 18653241 (-)
XLOC_028720 dre-let-7a-3 non-coding upstream 849027 18654155 ~ 18654261 (-)
XLOC_028721 NA non-coding upstream 849554 18654682 ~ 18679692 (-)

Expression


Co-expression Network