G962176


Basic Information

Item Value
gene id G962176
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28251597 ~ 28252435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096772
cgagcaccattCCCCGCTCTCTGCTTCTACAACCATACTGCTGTGGTCAGAGTGAGGTTGTAAATTCCTAGggaagaccctgcctcatggccacacagtatagagatagagtgaagtttcatagagaacaaaggaatttcttccacctcacagaggtgttctcagtcaactcacAGTGGggccaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacctggtgtacctggtaaaataacggataaataaaaataaaataaaaaaacagaacttgatgTCCGAACAACGTTTAcgttccggagaaggtataaaaggtcggtgaagaatccagctacgaactggtccatttgttacaacttggggaatctcatgggagacggtgcggccacattaccataacgctgtttatataatagccacagatatgaggtttacatctaattgttgtataagattaatgagtgagtatgatactgtttgtaaaattgtgtaatgtgattttggactgtttaatgaaggaaactcgaattcccttttgagttgaactaaatcagaggactgcccatgagcccagttagggtcaggcatcctgggacagccccttttctgcaattccgaataaaaccccaatCTTGAGAATTCCTCAagtagaccatgtttctctcaatcacaGGAGGACAAAGTTTcagaccattgctgaatattttaaccataccacgtggttaaactcttagactattgataccgacagaataagaacaagtctttgatattaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096772 True 839 lncRNA 0.41 1 28251597 28252435

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 2111 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 240566 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 406256 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 487427 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 653997 27593126 ~ 27597600 (+)
LOC110536610 NA coding downstream 239227 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 246675 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2836429 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3501434 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 4098247 32350682 ~ 32354712 (+)
G962171 NA non-coding upstream 5779 28245616 ~ 28245818 (+)
G962169 NA non-coding upstream 9133 28242238 ~ 28242464 (+)
G962166 NA non-coding upstream 12854 28238515 ~ 28238743 (+)
G962163 NA non-coding upstream 16065 28235289 ~ 28235532 (+)
G962159 NA non-coding upstream 19131 28232263 ~ 28232466 (+)
G962175 NA non-coding downstream 86 28252521 ~ 28252851 (+)
G962173 NA non-coding downstream 1107 28253542 ~ 28253907 (+)
G962174 NA non-coding downstream 2520 28254955 ~ 28255227 (+)
G962193 LOC106578559 non-coding downstream 22599 28275034 ~ 28275738 (+)
G962253 LOC106578560 non-coding downstream 110383 28362818 ~ 28429182 (+)
G962100 NA other upstream 22196 28227528 ~ 28229401 (+)
G961984 NA other upstream 310022 27897166 ~ 27941575 (+)
G961864 NA other upstream 422420 27828746 ~ 27829177 (+)
G965838 NA other downstream 2566403 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 5131608 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5205926 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5350612 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5352078 33604513 ~ 33604810 (+)

Expression


Co-expression Network