G962253 (LOC106578560)


Basic Information

Item Value
gene id G962253
gene name LOC106578560
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28362818 ~ 28429182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096863
TCAACTCTAGGGTAAAATCTTGGGAACCAAGGCTACAGAAAGCACTTGAGGATAACGATGTGCAGAACACTGCAATGCATTGATCTCCCTAGggttatatataaaatatacacacacaatttGCATCATACACAGACAGTGCCGACCATCGTAACCTGGCCAGACCACAAGCTCTCAGACAATCATTTGGTTATTAGTTTACAAACCAAAGACAGAACAACTCCGGTTATGCTTCGCTTATGTGTTTTTCCTTTTGCAGAAAAGGAGCAGAATCGGTATTTGAGCGGTCCTTTATGGCAGGTACAGTTATGACACTTTATGTATCTTGGATTACAATTCAAAAGTGCTTCAGGCTAAAATTTCAACTTCAAATATCACACATGACAAACCAAAAAGTCAGGAGACTGATTCGTTAGTTTTAGTTTGTTTTACTTTTTTTATAATGCAGGTCCCACTCCCTCACCTTAAACCTTCTTCACAATAACTGATCCATATTGCACTCACTATAGTCAGGTCTGTACAGCACTGGGCTATACCAGACAGTCTTCGCAGATGCTTCAGTTTTACACAGTATTGGGAAGGAAGGACAATGTTTTGGATCATTTCATTTTCTAAGCAATGGAGGATACAAAAAAAATAGTCAAATCAATAACggtaaacaaaaaaacaaacaatttaggTAGTTAAAAACAAATGGCAGCGACTAAAGCTTTCATCCTGCCTACACACCAATAAATAACTCAGATGCCATCTATCGACTGTAGCTAGGGGAGGATGGCGTTATGAAGATTGGTGACTGCGTGGACAAGACAGGCTCCGTTCCTACATCCACATTAGCATCCCACTTAGAATGTAATCTTGTTAACTAGACACAATTAGAAGGAGACAAGGTTACTTAGAATGAAGCAATGCATTGGCTAGTTTGGGCATGTGAGTGTTGACGCAGATCCCAATTCACCAGTCCCCCAAGCAAACCCCTGCATACAAGAGGCAGGTGTGCAGTCATAAAATGAAAAAGTTGGGCTGCTGAAGAATTTTGATGACAGATTCAGACACCGATGAAAAAAAGTTGAATAGAGAGGAAAAACAGAATCACTCAAATGTATGCCCAAACCACACAACTACACAGGCAGTAGGCACAGAAACAAGACACTATGAAACTCATGATTGGGCTAAAGTGAGGGGCTCATACGAGTTCTCACAAACTACTACACACTAACCAAGGGAGAAAAAAAAGCCATTTCTATATTTTTGCCGGAGAACATTTGTTTAAACGTCATCTTCGATATAGAGCATTATCTAACATGTCCTTGTGATAGGCGAAGTAGAGGGATACGCTGGCATAGTGACACATCATAAACTTGGACAAATTCATCAGGACAGTCAAGCATCTAGAACAATCTTTTTGTGGTCCGAGAAGTAATCTTTCCACTGACGGTACTTTTCTCTTCAGTGATAACATTGACATCACTAGGACAAGACATGTTGCATTTCTTCAATTTTATCAAAGGGGATACGAAGCACTTGCATGTGCTGTTATTGATATACATTGATAGGGAACATTGCAGTTCAACCATTATAAAATGTCATCATACAGTACATTAACATGGACTGAATAGCTTGGACTTAGATAGGTGTGACACTGAAGCAGCTTCATTTTCCAATGTGAAAAAAAAATCTCACTTTTTGCCATTCGCCTCACAGGTTGTCCTATCCAACAGGATTCatctcaaattgcaccctattccccatttagtgcactacttttaaccaagcTCTTGTAGTGCATTAGAaagagaacagggtgccatttgggagtcaTTTTCTGTCAATCACAAGTGCATGGTCCGGAAGATGTGTTCTACTACAGCATTTTAGCCCCGTAAGAAACGTCAAAGAGAAAGTAAAAAATGTCAGTGCTCAATCTAACTGTACAATAGAGGACAGTAGTGTATTTGTATACCTTTGATTAAGCTTATTTTAATCTAGACAGCAGGGTTAATTtgatgatatactgtacatggatAATCAGGCTAGGATGCTTCTCAGCAGATTTTCCAAActttgtctttaaaaaaaaaaaaaaacaaaaaaaaggaaaCTGTAAACACAGCACAATAAATAGATAAAACAGCAGGCTCTGCACCATGCATGTGATGAAACGTCTCTTCTGAAATGTCTCTTTCGTTTATACAACTCTCACATCTCACACTCACAAGTTTAtcgcttttttatttttattcccaAGTGCAAAACATCACAAATAAAACAAGTTTCTGTATTCAAGTAACATATAtacaaggggggaggggggggggggggagggtatTACAAATATTTAGTTACTGTACAGATACTAATTTGCCATATTCATAATTTACACAATGTCAATTTTTACTCTTATTAACAGTAACgaatacaaaaacaaaaacatttaaaaagcatGAGATGAGAATTGCAACCCATGTAATCCCCACAGTTGCCGTGGAAACGTGTCTGTCCGTACTCCGTATGTAGCCcgttgtgtgtatgtgagtggagTCCCGCCGACCACCCGCCTACCGTCCCTTTTTGCATTCCCAATGCTACGATGCACAGCACCTAAAGAGTGGATTGAGAGAGTAGCAGCAGACTCTCAGCAGAGGACTGGTTGGCCAGCAGAGGGTTGGGTAGCGTTGGGCCTGGCTGGACTGTCATGGTAGCTAGCAGCACCACCACCGCTCTGCTACGTCACCTCCATGGCCACTGTGTTGTCCGCTATACTGTTCAGAGCTGGTTTGTCTTGATCGTG
>TU1096857
TCTGAGCCGAGTGGCCCCTCCTGGCCATGTTCTTAGCCCTGACGGCCTCCTTGATGCGGTCCACCTCCAGCTGGTAACGTTTGCGGTCACGTGCAGCGTTCTCTTTGGCCTCCTTCAGGGCAGACTCCAGGGCCTTGACCCGCTCAGCTGTAGCACGCAGGCGCTTCTCCAGTTTAGGAAGCTCACAGCGCAGGTCGGCATTATCACGCaccagctggggggggggggggggggtatTACAAATATTTAGTTACTGTACAGATACTAATTTGCCATATTCATAATTTACACAATGTCAATTTTTACTCTTATTAACAGTAACgaatacaaaaacaaaaacatttaaaaagcatGAGATGAGAATTGCAACCCATGTAATCCCCACAGTTGCCGTGGAAACGTGTCTGTCCGTACTCCGTATGTAGCCcgttgtgtgtatgtgagtggagTCCCGCCGACCACCCGCCTACCGTCCCTTTTTGCATTCCCAATGCTACGATGCACAGCACCTAAAGAGTGGATTGAGAGAGTAGCAGCAGACTCTCAGCAGAGGACTGGTTGGCCAGCAGAGGGTTGGGTAGCGTTGGGCCTGGCTGGACTGTCATGGTAGCTAGCAGCACCACCACCGCTCTGCTACGTCACCTCCATGGCCACTGTGTTGTCCGCTATACTGTTCAGAGCTGGTTTGTCTTGATCGTG

Function

NR:

description
PREDICTED: kinesin-1 heavy chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096863 False 2791 lncRNA 0.40 2 28362818 28429182
TU1096857 True 699 lncRNA 0.53 2 28365917 28429182

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 113332 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 351787 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 517477 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 598648 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 765218 27593126 ~ 27597600 (+)
LOC110536610 NA coding downstream 62480 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 69928 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2659682 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3324687 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3921500 32350682 ~ 32354712 (+)
G962193 LOC106578559 non-coding upstream 87080 28275034 ~ 28275738 (+)
G962174 NA non-coding upstream 107591 28254955 ~ 28255227 (+)
G962173 NA non-coding upstream 108911 28253542 ~ 28253907 (+)
G962175 NA non-coding upstream 109967 28252521 ~ 28252851 (+)
G962176 NA non-coding upstream 110383 28251597 ~ 28252435 (+)
G962255 LOC106578561 non-coding downstream 883 28430065 ~ 28430895 (+)
G962299 NA non-coding downstream 7252 28436434 ~ 28436800 (+)
G962305 NA non-coding downstream 14747 28443929 ~ 28444138 (+)
G962307 LOC106578561 non-coding downstream 20037 28449219 ~ 28449630 (+)
G962308 NA non-coding downstream 20690 28449872 ~ 28450198 (+)
G962100 NA other upstream 133417 28227528 ~ 28229401 (+)
G961984 NA other upstream 421243 27897166 ~ 27941575 (+)
G961864 NA other upstream 533641 27828746 ~ 27829177 (+)
G965838 NA other downstream 2389656 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4954861 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5029179 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5173865 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5175331 33604513 ~ 33604810 (+)

Expression


Co-expression Network