G962299


Basic Information

Item Value
gene id G962299
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28436434 ~ 28436800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096920
AGCAGAGCAGAGGAGTGCTACTGACCTGTGTGTTGGGTGGTGGTGCTGTGGATGTAGTAGTAGAGGATGGGTCTGTGTTTGCCTGCTGCTGTGCCTGTTGCTGCTGTGCCTGTTGCTGCTGTTGGATCTGCTCAAGCTGCTGTTTCTGCATCAGGGCCAGCTGCTCCTGGTGCTGTTGGTACTGCTCTGCTGTGAATGCTACAGAGACAGGATAACAATGTTATACACACACATGGGTTATACACAAACTGGTCACAGGAGAATGAATGAAGAGTCAGGGTTCATACACATTGACTGATGTCATGAAATTCCTTTTCCATGACTTAAACAAATTTCCATGACCAACAATTGGTGGCATCTATGTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096920 True 367 lncRNA 0.48 1 28436434 28436800

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 186948 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 425403 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 591093 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 672264 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 838834 27593126 ~ 27597600 (+)
LOC110536610 NA coding downstream 54862 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 62310 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2652064 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3317069 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3913882 32350682 ~ 32354712 (+)
G962255 LOC106578561 non-coding upstream 5539 28430065 ~ 28430895 (+)
G962253 LOC106578560 non-coding upstream 7252 28362818 ~ 28429182 (+)
G962193 LOC106578559 non-coding upstream 160696 28275034 ~ 28275738 (+)
G962174 NA non-coding upstream 181207 28254955 ~ 28255227 (+)
G962173 NA non-coding upstream 182527 28253542 ~ 28253907 (+)
G962305 NA non-coding downstream 7129 28443929 ~ 28444138 (+)
G962307 LOC106578561 non-coding downstream 12419 28449219 ~ 28449630 (+)
G962308 NA non-coding downstream 13072 28449872 ~ 28450198 (+)
G962310 NA non-coding downstream 15187 28451987 ~ 28452215 (+)
G962311 NA non-coding downstream 15978 28452778 ~ 28453159 (+)
G962100 NA other upstream 207033 28227528 ~ 28229401 (+)
G961984 NA other upstream 494859 27897166 ~ 27941575 (+)
G961864 NA other upstream 607257 27828746 ~ 27829177 (+)
G965838 NA other downstream 2382038 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4947243 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5021561 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5166247 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5167713 33604513 ~ 33604810 (+)

Expression


Co-expression Network