G962307 (LOC106578561)


Basic Information

Item Value
gene id G962307
gene name LOC106578561
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28449219 ~ 28449630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096928
CGGGTGTAGCTCCTGGGCCAGTGCGGGGTAGGGCGTTAGCTCCACTCCCCAAGAGCCTGCTCTGTCCCAAGGACGTACTCTGAGTAAATCCTCTAAATCCTCTGTAGCGTGAGATGTCACCACCCAGGGGGTGATGGGATAGCGTCCGCGGCCTAAAGTGCCTCCAGCGGCCCGACTTAATGTTCAACAGAATCTCACTGAGGTCCACAGATGacgaagaggaagaagaggggtgGTGGTTGTTGGGAGCATTGGTTCGGTCCGAGGTATTGGTGTCTGAGGTACTGGCAGGCGCTGCGCTGCGGAGAGGAGAGCTTGTGGGAGGAGATGAGGCTTGAAGTGGTTCGGTCTCGGGGTCCGAGTCCAGGCTGTGGAAAATATTGTCCAGATCTGTGTGCGCTCTGTCCAGCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096928 True 412 lncRNA 0.58 1 28449219 28449630

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 199733 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 438188 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 603878 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 685049 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 851619 27593126 ~ 27597600 (+)
LOC110536610 NA coding downstream 42032 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 49480 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2639234 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3304239 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3901052 32350682 ~ 32354712 (+)
G962305 NA non-coding upstream 5081 28443929 ~ 28444138 (+)
G962299 NA non-coding upstream 12419 28436434 ~ 28436800 (+)
G962255 LOC106578561 non-coding upstream 18324 28430065 ~ 28430895 (+)
G962253 LOC106578560 non-coding upstream 20037 28362818 ~ 28429182 (+)
G962193 LOC106578559 non-coding upstream 173481 28275034 ~ 28275738 (+)
G962308 NA non-coding downstream 242 28449872 ~ 28450198 (+)
G962310 NA non-coding downstream 2357 28451987 ~ 28452215 (+)
G962311 NA non-coding downstream 3148 28452778 ~ 28453159 (+)
G962312 NA non-coding downstream 4027 28453657 ~ 28453995 (+)
G962313 NA non-coding downstream 5320 28454950 ~ 28456138 (+)
G962100 NA other upstream 219818 28227528 ~ 28229401 (+)
G961984 NA other upstream 507644 27897166 ~ 27941575 (+)
G961864 NA other upstream 620042 27828746 ~ 27829177 (+)
G965838 NA other downstream 2369208 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4934413 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5008731 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5153417 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5154883 33604513 ~ 33604810 (+)

Expression


Co-expression Network