G962315 (LOC106578561)


Basic Information

Item Value
gene id G962315
gene name LOC106578561
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28457274 ~ 28457555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096936
TTTCTGGTCTGCATCTTCTCAGTCCTCCTGCGGAAGGCCACGTAGGGGTCTGAGGTGCTGgatccatctctcttctcctgcTTCACAGTGGGGATGAGTGAGCTACTCTTACAGTTTTTTCGCTTCCTCGTCCAGTAGTCAAACACCTCCTTGATCAGCTCGTCATCCTCCTTCAGCAGCAGCTTGGCCTCCTGCAGGCTCAccagctgaggagaggaggaaacacACATTTAGTCACACTGTTCTTTCTAGTCTTCAATAAACCACCTACACAAATCATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096936 True 282 lncRNA 0.50 1 28457274 28457555

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 207788 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 446243 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 611933 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 693104 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 859674 27593126 ~ 27597600 (+)
LOC110536610 NA coding downstream 34107 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 41555 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2631309 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3296314 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3893127 32350682 ~ 32354712 (+)
G962313 NA non-coding upstream 1136 28454950 ~ 28456138 (+)
G962312 NA non-coding upstream 3279 28453657 ~ 28453995 (+)
G962311 NA non-coding upstream 4115 28452778 ~ 28453159 (+)
G962310 NA non-coding upstream 5059 28451987 ~ 28452215 (+)
G962308 NA non-coding upstream 7076 28449872 ~ 28450198 (+)
G962316 NA non-coding downstream 183 28457738 ~ 28457946 (+)
G962317 NA non-coding downstream 1118 28458673 ~ 28459065 (+)
G962318 NA non-coding downstream 3079 28460634 ~ 28461655 (+)
G962324 LOC108280341 non-coding downstream 16228 28473783 ~ 28474391 (+)
G962327 NA non-coding downstream 19481 28477036 ~ 28478993 (+)
G962100 NA other upstream 227873 28227528 ~ 28229401 (+)
G961984 NA other upstream 515699 27897166 ~ 27941575 (+)
G961864 NA other upstream 628097 27828746 ~ 27829177 (+)
G965838 NA other downstream 2361283 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4926488 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 5000806 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5145492 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5146958 33604513 ~ 33604810 (+)

Expression


Co-expression Network