G962324 (LOC108280341)


Basic Information

Item Value
gene id G962324
gene name LOC108280341
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28473783 ~ 28474391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1096957
GGAAAAATGTAGGTGTAACACGCAAATTACGTCGCTATCTACCGTGTTCACGGTAAACCGATATGGCCGCCATTTTGTGCAAAGTTGCGCAGGCAAGGTAGCGACGCCCCCCATATTGTGAAAATGTGGAATACATATCAAATATGAATCTGCCAGCGATAAAACATACCGAttcttcctctttctccatcccagTTGGCATTTGCGGTACTGCCCGATTGATAGAGGCATATTCGTGCAGGTCTGGCAAGTCCTCGCAGCGAAAGACGGGTAGAGGCTTGGTAGCGTCCAGCGCCCGTGCCCGAAACGACAATTTACTCATGTTTTTTTATAATGTAAGATTCAGCATTAATCTAACCGATAACCTAAGGTTCACAACAGTACTGCTTTGAGTTCTCATGGATGGATCTGCGATGTTCGCCAGAAGTCAACCGTTCGATTGGTAGTAGGGTAGGTATATGGAGATGCGAACGGAGCCGGGAAGGCCCGGGTTTTGAtcgctctctgtcggtctctttTTTCCGAGGCTCCGCTCTCCCTGGTTCAATACGC
>TU1096960
GGAAAAATGTAGGTGTAACACGCAAATTACGTCGCTATCTACCGTGTTCACGGTAAACCGATATGGCCGCCATTTTGTGCAAAGTTGCGCAGGCAAGGTAGCGACGCCCCCCATATTGTGAAAATGTGGAATACATATCAAATATGAATCTGCCAGCGATAAAACATACCGAttcttcctctttctccatcccagTTGGCATTTGCGGTACTGCCCGATTGATAGAGGCATATTCGTGCAGGTCTGGCAAGTCCTCGCAGCGAAAGACGGGTAGAGGCTTGGTAGCGTCCAGCGCCCGTGCCCGAAACGACAATTTACTCATGTTTTTTTATAATGTAAGATTCAGCATTAATCTAACCGATAACCTAAGGTTCACAACAGTACTGCTTTGAGTTCTCATGGATGGATCTGCGATGTTCGCCAGAAGTCAACCGTTCGATTGGTAGTAGGGTAGGTATATGGAGATGCGAACGGAGCCGGGAAGGCCCGGGTTTTGAtcgctctctgtcggtctctttTTTCCGAGGCTCCGCTCTCCCTGGTTCAATACGCCATGGCCAACATGGCGGACATTACAAACTCTAGCAGCTCCTAGCGGCCCAACCCCCG
>TU1096953
CCGAttcttcctctttctccatcccagTTGGCATTTGCGGTACTGCCCGATTGATAGAGGCATATTCGTGCAGGTCTGGCAAGTCCTCGCAGCGAAAGACGGGTAGAGGCTTGGTAGCGTCCAGCGCCCGTGCCCGAAACGACAATTTACTCATGTTTTTTTATAATGTAAGATTCAGCATTAATCTAACCGATAACCTAAGGTTCACAACAGTACTGCTTTGAGTTCTCATGGATGGATCTGCGATGTTCGCCAGAAGTCAACCGTTCGATTGGTAGTAGGGTAGGTATATGGAGATGCGAACGGAGCCGGGAAGGCCCGGGTTTTGAtcgctctctgtcggtctctttTTTCCGAGGCTCCGCTCTCCCTGGTTCAATACGC
>TU1096956
CCGAttcttcctctttctccatcccagTTGGCATTTGCGGTACTGCCCGATTGATAGAGGCATATTCGTGCAGGTCTGGCAAGTCCTCGCAGCGAAAGACGGGTAGAGGCTTGGTAGCGTCCAGCGCCCGTGCCCGAAACGACAATTTACTCATGTTTTTTTATAATGTAAGATTCAGCATTAATCTAACCGATAACCTAAGGTTCACAACAGTACTGCTTTGAGTTCTCATGGATGGATCTGCGATGTTCGCCAGAAGTCAACCGTTCGATTGGTAGTAGGGTAGGTATATGGAGATGCGAACGGAGCCGGGAAGGCCCGGGTTTTGAtcgctctctgtcggtctctttTTTCCGAGGCTCCGCTCTCCCTGGTTCAATACGCCATGGCCAACATGGCGGACATTACAAACTCTAGCAGCTCCTAGCGGCCCAACCCCCG

Function

NR:

description
LOW QUALITY PROTEIN: enhancer of polycomb homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1096957 False 552 lncRNA 0.48 1 28473783 28474334
TU1096960 False 609 lncRNA 0.49 1 28473783 28474391
TU1096953 False 384 lncRNA 0.50 1 28473951 28474334
TU1096956 True 441 lncRNA 0.51 1 28473951 28474391

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 224297 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 462752 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 628442 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 709613 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 876183 27593126 ~ 27597600 (+)
LOC110536610 NA coding downstream 17271 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 24719 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2614473 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3279478 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3876291 32350682 ~ 32354712 (+)
G962318 NA non-coding upstream 12128 28460634 ~ 28461655 (+)
G962317 NA non-coding upstream 14718 28458673 ~ 28459065 (+)
G962316 NA non-coding upstream 15837 28457738 ~ 28457946 (+)
G962315 LOC106578561 non-coding upstream 16228 28457274 ~ 28457555 (+)
G962313 NA non-coding upstream 17645 28454950 ~ 28456138 (+)
G962327 NA non-coding downstream 2645 28477036 ~ 28478993 (+)
G962418 NA non-coding downstream 141517 28615908 ~ 28616493 (+)
G962981 NA non-coding downstream 246789 28721180 ~ 28722160 (+)
G963007 NA non-coding downstream 262955 28737346 ~ 28737567 (+)
G962100 NA other upstream 244382 28227528 ~ 28229401 (+)
G961984 NA other upstream 532208 27897166 ~ 27941575 (+)
G961864 NA other upstream 644606 27828746 ~ 27829177 (+)
G965838 NA other downstream 2344447 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4909652 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 4983970 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5128656 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5130122 33604513 ~ 33604810 (+)

Expression


Co-expression Network