G962418


Basic Information

Item Value
gene id G962418
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28615908 ~ 28616493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1097064
CGTCTCTGTGTCCATCACTTTGAAGAGGAATGTCTTCGATATGATGACAAGGGAAAAGTCTGCCTCACCCCGACTATTGTGCCCACCGTTTTCTCCTTTCCAGATCGTCTTCTAAAGCGGTCACAATGCCCCAGGGAAAGACGAAGGAATTTGGTAGATACAGAGTTTGGAAGCAACGCTGCCATCGCTGCTGATTCCTTGCCTCTACAAGAGAGCGTCCTGGCTGACTATAGTGGATCTGCAGGCCGCTGACGACACTAGCCAATATTCCCACATCTCAGCTGAGCAGAGGATCCAATACCGAC

Function

NR:

description
PREDICTED: THAP domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1097064 True 305 lncRNA 0.50 2 28615908 28616493

Neighbor

gene id symbol gene type direction distance location
LOC118937385 NA coding upstream 109892 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 123084 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 366422 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 604877 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 770567 27810049 ~ 27845341 (+)
LOC110535568 LOC106578592 coding downstream 2472371 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3137376 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3734189 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 3754968 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 3845932 32462425 ~ 32476477 (+)
G962327 NA non-coding upstream 136915 28477036 ~ 28478993 (+)
G962324 LOC108280341 non-coding upstream 141517 28473783 ~ 28474391 (+)
G962318 NA non-coding upstream 154253 28460634 ~ 28461655 (+)
G962317 NA non-coding upstream 156843 28458673 ~ 28459065 (+)
G962981 NA non-coding downstream 104687 28721180 ~ 28722160 (+)
G963007 NA non-coding downstream 120853 28737346 ~ 28737567 (+)
G963044 NA non-coding downstream 145922 28762415 ~ 28762633 (+)
G963056 NA non-coding downstream 156871 28773364 ~ 28773575 (+)
G963061 NA non-coding downstream 161759 28778252 ~ 28778641 (+)
G962100 NA other upstream 386507 28227528 ~ 28229401 (+)
G961984 NA other upstream 674333 27897166 ~ 27941575 (+)
G961864 NA other upstream 786731 27828746 ~ 27829177 (+)
mtpap LOC106578552 other upstream 850494 27739381 ~ 27765414 (+)
G965838 NA other downstream 2202345 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4767550 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 4841868 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 4986554 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 4988020 33604513 ~ 33604810 (+)

Expression


Co-expression Network