G963071


Basic Information

Item Value
gene id G963071
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28789294 ~ 28805540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1097770
tgtttttacagatgaacatggtaccttcaggcgtttggaaattgctcccaaggatgaaccagacttgtggaggtctacactttttttctgaggtcttggctgatttatttagattttcccattatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatatatccacacaactccaactgactcaaattacgtcaattagcctatcagattcttctaaagccatgacatcatttgctGGAATTTTctgagctgtttaaaggcacagtcaacttagtgtatgttaagttctgacacactggaattgtgaaacagtgaattataagtgaaataatctgcctgtaaacaattgttggaaagatgacTTGTGCCGtgcacaaagtcgatgtcctaaccgacttgccaaaactatagtttgttgacaagaaatttgtggagtggttgaaaacgagtttaatgaccccaacctaagtgtatgtaaacttctgtttTCAACTGTATCTACAAAAATTCATCTCACCTCTGTCAGACTGGTCTTCCTTGGCTGCCTGACCATGCTGAGgtccctgtcac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1097770 True 579 lncRNA 0.40 2 28789294 28805540

Neighbor

gene id symbol gene type direction distance location
LOC118937385 NA coding upstream 283278 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 296470 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 539808 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 778263 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 943953 27810049 ~ 27845341 (+)
LOC110535568 LOC106578592 coding downstream 2283324 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 2948329 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3545142 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 3565921 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 3656885 32462425 ~ 32476477 (+)
G963061 NA non-coding upstream 10653 28778252 ~ 28778641 (+)
G963056 NA non-coding upstream 15719 28773364 ~ 28773575 (+)
G963044 NA non-coding upstream 26661 28762415 ~ 28762633 (+)
G963007 NA non-coding upstream 51727 28737346 ~ 28737567 (+)
G962981 NA non-coding upstream 67134 28721180 ~ 28722160 (+)
G963248 NA non-coding downstream 114669 28920209 ~ 28920505 (+)
G963484 NA non-coding downstream 404533 29210073 ~ 29251481 (+)
G963527 NA non-coding downstream 466835 29272375 ~ 29280765 (+)
G963560 NA non-coding downstream 513620 29319160 ~ 29338476 (+)
G963576 NA non-coding downstream 534234 29339774 ~ 29379378 (+)
G962100 NA other upstream 559893 28227528 ~ 28229401 (+)
G961984 NA other upstream 847719 27897166 ~ 27941575 (+)
G961864 NA other upstream 960117 27828746 ~ 27829177 (+)
mtpap LOC106578552 other upstream 1023880 27739381 ~ 27765414 (+)
G965838 NA other downstream 2013298 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4578503 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 4652821 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 4797507 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 4798973 33604513 ~ 33604810 (+)

Expression


Co-expression Network