Fish Transcriptome and Expression Database

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model fish

XLOC_028709 (BX901882.1)

Basic Information

Item	Value
gene id	XLOC_028709
gene name	BX901882.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	18189406 ~ 18189520 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055660
GCTGgctgctagctctctgcaactttaACATGGTCACCCATTAAAGCTTAGCAGGGCTGTGCCCAGtctgtacctggatgggagaccacatggaaaagctaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111346

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00055660	True	115	rRNA	0.52	1	18189406	18189520

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_028707	NA	coding	downstream	306476	17875071 ~ 17882930 (-)
XLOC_028706	avpr2l	coding	downstream	351227	17836098 ~ 17838179 (-)
XLOC_028705	dnajb9b	coding	downstream	365982	17821390 ~ 17823424 (-)
XLOC_028704	spic	coding	downstream	377275	17807837 ~ 17812131 (-)
XLOC_028703	spi2	coding	downstream	384278	17801328 ~ 17805128 (-)
XLOC_028710	uhrf1bp1l	coding	upstream	18135	18207655 ~ 18281160 (-)
XLOC_028711	plxnc1	coding	upstream	92434	18281954 ~ 18315912 (-)
XLOC_028712	cradd	coding	upstream	193733	18383253 ~ 18416566 (-)
XLOC_028713	socs2	coding	upstream	242662	18432182 ~ 18436899 (-)
XLOC_028714	sco2	coding	upstream	264182	18453702 ~ 18455480 (-)
XLOC_028702	BX890572.1	non-coding	downstream	451594	17736443 ~ 17737812 (-)
XLOC_028696	NA	non-coding	downstream	559962	17571295 ~ 17629444 (-)
XLOC_028690	NA	non-coding	downstream	973183	17113379 ~ 17216223 (-)
XLOC_028684	NA	non-coding	downstream	1364850	16763705 ~ 16824556 (-)
XLOC_028719	dre-let-7b	non-coding	upstream	463628	18653148 ~ 18653241 (-)
XLOC_028720	dre-let-7a-3	non-coding	upstream	464635	18654155 ~ 18654261 (-)
XLOC_028721	NA	non-coding	upstream	465162	18654682 ~ 18679692 (-)
XLOC_028722	NA	non-coding	upstream	523243	18712763 ~ 18714926 (-)
XLOC_028730	dre-mir-129-1	non-coding	upstream	857946	19047466 ~ 19047555 (-)

Expression

Co-expression Network