XLOC_028711 (plxnc1)


Basic Information

Item Value
gene id XLOC_028711
gene name plxnc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18281954 ~ 18315912 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055664
GCTTTGTTGACTTGCAAACAGAAAAATCGGACTTAATTGATAACGTTGGAGCCATACCTTTCCTGGATTATAAACACTTTGCGTCAAGAATCTTCTTTCCAGAGGTTgaagagttttatttatttaagtttactATTTGATGTTTATCGACTATTATAGACTTTTTAGGCATTTATTCTAAATTATAGATGTTTTTTCTTATATTCTTATATTCTTTAGGCTGGTACTCTAACAGCAGTCATGATTAGAGATATTGGGGAGGTAAGAATCTTACCATGCTTTCACAGACGAGGCTTCAATGCTGTTTCAAATGAAAGTATCTTGCACTCATTGGTCTTTAAATATATcagggttttgttttgtttcaaaatgGACGCCAgttgtgctttttgttttttgtaagccacatttataaaaaaaaaaagtaatttaaatattgaACTTAAGTATAAACCATGTCTGTGAAACCATGCTTAAAGTTTTAACTCTATTACTGTCTTTTCTTGTGGCCAGGACTCTGAGCAAACAACTGTCGATGAGAAATGCCTGGCTTTTGCAGAGCTGATCAGAGATAAGCAGTTTCTCAGTTGTTTTGTGCATGCATTAGAGGAACAGAAAAACTTCAGCATTAAAGACAAATGCACTGTGGCATCTCTATTGACTCTGGCTCTCCACGGAGACCTGCTTTATCTCACAGAAATAATGGAGGATCTTCTGCAGAGTCTGATGGACCAATCCAGCAATGCAAATCCCAAACTTCTCCTGCGCCGCACAGAGTCCATAGTGGAGAAGCTCCTGACCAATTGGATGTCCATCTGTCTTTACGGCTTCCTCAGGGAATCAGTAGGACAACCGTTGTTCCTGCTGGTTTCAGCTTTGACTCAGCAGATCTCTAAAGGCCCGGTGGATTCGGTGACAGAAAAGGCTCTTTATACACTCAGCGAAGATTGGCTTCTCTGCCAAGCGCAGGACTTTGAGCCCCTGAAACTGAAGGTGGTGTTTGCCGTGGGCACTGGAGAAGAGATCAGCGAATCCTTAGAGGTCATCGCACTGACCTGCGACACAATTCAGCAAGTCAAGGAGAAAATCTTACAGACATTTCAGCGCAAGTTTGGTTTCCGCTACACACAGCAGATCAGGGATATAGAAATCGAATATGAGAAGGAAGGAAAGTTTGTCATGCTACAGGAAGTTGATGACACCTCAGAAATTCGAGGGCACGTTACCATGTTAAACACTCTGAAACATTATCAGGTTGGAGATGGAGCATGTATTAAAGTTATTACACCAAAAATTCATGCCCCATTGAAGACTCAAAACAGTGTAAAAGATGATAAGAACTTCTCTATCAAGTACTTCCATCTGGTTGATCCAGATATTGACACGGACTTGAGCAACCACCCGGAGAAAAAAGCCTTAAAAATCAAAGAGATGTACCTCATCAAGCTGCTCTCCACCAAAGTTGCAGTTCATTCTTTTGTGGAGAATCTGTTCAAGAGTATCTGGGGTTTGCCTAATAACAAAGCCCCACTGGCTGTCAAGTACTTTTTCGACTTCCTTGATGAACAAGCAGAGAGAAAAAAGATCACAGATCCAGACGTCCTGCACATCTGGAAAACAAACAGCCTTCCGCTTCGTTTCTGGGTAAACATCCTGAAGAACCCTGACTTTGTGTTCAGTGACATGGAGAAGTCGCCTCATCTGGatggctgtctgtctgtcataGCTCAGGCCTTCATGGACTCCTTCTCTCTAACAGACACACACCTGGACAAGCATTCACCAACCAATAAGCTACTCTACGGGAAAGACATTCCTCAGTACAAACAGGAAGTAAAGTCATACTACAAATTAGTAAAGGACCAGACGTCTATCAGCAGCCAAGAGTTGAAAACGTTCCTCCAAGAGGAGTCAAAGAAACATCAGAATGAGTTCAATGAATCGGCGGCTCTCCGTGAGCTCTACAAATACATGCAGCGCTACTTCACTGAGATTTTTCAGAAGCTGGAGCAGACAGATGCCCCATCTAATCTGAAAGAGAACATGCACAGAGTCAAGGAGCTTTTTGACAACATGAAGCGAAGCGGCTGGAACTGAACTTCTTCTTTGTGTTATCCAAATGGGTATTCACACTGCACTCTGTTTTCTTTTTATGcacaataaacagaaatgaactgGAAGCGTGTCTTTTTAGGGACTGCCATCACCAGCAGAGAGAACACACACGTTCACTTCTGTATGTTGGCTGGATGGTGTACGTGACTATGCGAATGTACTGCATATCTGTCAATTATAGAATTTGAAAGAAGCTCATCATCTACTTATTTTAGACTAACACTGAGCTGTTTATTAAATGTCACAAATTTATAAGTATGCAATGTGATGCAAATAGTTGTTTCAATTTTTTATGATGTGTTAAAATAACATGGGCTGCCTCCAATCATTTTATAACTCTGCTTAAGGTTAAACATCTTTTGCAAATGGACTAAATAGTTATTTTTGTAAACTGCTTACTTTTGTAACTGTCCTAGTCTGAACTATACTAATAAAATGTGTGTGATTTTGTGTGAAAATGTTTGTGTAATGTATTGAACGACTGTGTGATTACTGTTAGTTTATGTTCCTTTGTCGCCCTCTAACGGTTacactaataataatttaaattctaATGAGGTTTATTTATAACTACTTACATTAAATCACATCGAAACCAATTAGGGACAGCAGGCCAGGTTGTAAACGTCATTCAggctaatttatttatataacattcAAGGTTTTTTGAAGACAATTATTTTGTTCATCAAGGtggaatttattaaatgtaacaaaaatgttaaattgttaaatatttattaattaaaaaaaatattcttattgTGTGTAGTTGTATGTATTGTATGTATTACTCCAGTCGTTGTTGcttttactactattactattattaataataataataattgatattagagtgatttctgaaggatcatgtgactctgaagactggagttacgaagctgaaaattcatcattaaaatcactggaataaatgattaaattaaatgataaactacttttgaacagttattttatagtgcaaaaatatttcacaattttacatttgCGCTGTATTTTtggtgataaataaataaatgcagccttggtgagcaggagaaacttatgttaaaacatttaaaaatcgttCAAGCCCCAAAATGTGGACCGGTAGTGTCTATATTAAATTGTGTAAAAtaattgcatattt
>TCONS_00055665
AGTGATCTTCAGCCGCTCTCTGTGGTGTTCAAGTCCAGCTCAATGTCATCAGTAGCTGCAGTTAGAAATGGATCCTGGATTGTGCTGTTCATGGGAAACAGTGATGGTCAACTGATAAAGCTGGTCTTGGATGAGAATTACACACCAAGCTGTCCAACAGTGCTGTATAAATCAGATGATGAACGAGCAGTGTTTCCCAGAATGCACTTTGACCCTGTAGATTCCAAATACATCTACATCGCTCTGAGGAAACAGataAGAAGAGTGTCTGTGGTTCGCTGTGCTAAATACAACACTCTAAAGGACTGCAGATCGGCTCTTGATCCTCTCTGTGGTTGGTGTGTGAACACACAGAGGTGTGTGCAGTGTATCTCATCTGGATGTCACTGGTCTTCTTCATCTAAGCGCTGTGGTTGGACACAAGGAAGGGAACCACAGTTAAACATTCAGgATGCATGTAAGGATCTACTCTCTGAGTACAAAGAGCCAGAGATTCTCTCTTTAGAGCCCCACAAAGTTTCTTTTAATGGCAGAAACAATGTTTTACTAAGAGGAAGGAACCTGGACTCTGTCACCAAAATCCGTATTCAGGGGGATCTGGGCTGTATTGCTAAAGAATCTCCAGTGTTTGATCCCTCCAGTGACACTTTAGTGTTCAACATTCCTCCCAGTGAATCTAAAGGAACAGTGAAAATGTGTGTTGTTACTCCTGACAACCGCTGTCATGGCAACAGCATCATCACTTACAGTTCCCAGCCCAGATGCACAGGAGTACAGCCTAGAAACAGCTGGAGAAGCGGTGGAAGGAAGATTCATGTTCAGGGGACCAATATGGAATATGTGGAGTCAGTTATTGTTCAACCTTCTAATATATTCCTGAAAAGCCAGTATGATGCAAGCTCAAGGGATATGTGGTTTTATTCTCATCGTATTGAAGGCAGTGATCACTTTACCTTGTCACTGATGGTTGGAAACTCCACTGAAGCCTGTGATCATGATTTCTCCTATGAGCCTGATCCAGTATTCACTGGATTCACTACATTACAGGTGGCTAATGATCTACAGGTGAACATTCAGAAAAAGGCAGATAAGTTGAATTTAAATATAAGTGAGGTGAAGGTGGCGGGTTTACATGGAGATAAAGGGTATCAGTGTGTTGTGGAGAGGATTGAATCCAATGCTGTTATCTGTAAGATTAAAGCAGGTCCAGGAGCATTGGATTCACTCAATATAAGCATTGGTCATTTTTATGTTAAACAAACCTTTGAGTCTCCAAGTGGTATGAagtatttttccatccttgtCGTGTTGATTGTGATCATTATTCTGGGTGCTGTTGTTGGAGTCATTGTTCATCGAAAGAGCCAGAAACAAATGAGTAAGAAAATGAACGATCAACTGGAACTGATGGAAAGCAACATCAGAAGGGACATAAGGCAAGGCTTTGTTGACTTGCAAACAGAAAAATCGGACTTAATTGATAACGTTGGAGCCATACCTTTCCTGGATTATAAACACTTTGCGTCAAGAATCTTCTTTCCAGAGGCTGGTACTCTAACAGCAGTCATGATTAGAGATATTGGGGAGGACTCTGAGCAAACAACTGTCGATGAGAAATGCCTGGCTTTTGCAGAGCTGATCAGAGATAAGCAGTTTCTCAGTTGTTTTGTGCATGCATTAGAGGAACAGAAAAACTTCAGCATTAAAGACAAATGCACTGTGGCATCTCTATTGACTCTGGCTCTCCACGGAGACCTGCTTTATCTCACAGAAATAATGGAGGATCTTCTGCAGAGTCTGATGGACCAATCCAGCAATGCAAATCCCAAACTTCTCCTGCGCCGCACAGAGTCCATAGTGGAGAAGCTCCTGACCAATTGGATGTCCATCTGTCTTTACGGCTTCCTCAGGGAATCAGTAGGACAACCGTTGTTCCTGCTGGTTTCAGCTTTGACTCAGCAGATCTCTAAAGGCCCGGTGGATTCGGTGACAGAAAAGGCTCTTTATACACTCAGCGAAGATTGGCTTCTCTGCCAAGCGCAGGACTTTGAGCCCCTGAAACTGAAGGTGGTGTTTGCCGTGGGCACTGGAGAAGAGATCAGCGAATCCTTAGAGGTCATCGCACTGACCTGCGACACAATTCAGCAAGTCAAGGAGAAAATCTTACAGACATTTCAGCGCAAGTTTGGTTTCCGCTACACACAGCAGATCAGGGATATAGAAATCGAATATGAGAAGGAAGGAAAGTTTGTCATGCTACAGGAAGTTGATGACACCTCAGAAATTCGAGGGCACGTTACCATGTTAAACACTCTGAAACATTATCAGGTTGGAGATGGAGCATGTATTAAAGTTATTACACCAAAAATTCATGCCCCATTGAAGACTCAAAACAGTGTAAAAGATGATAAGAACTTCTCTATCAAGTACTTCCATCTGGTTGATCCAGATATTGACACGGACTTGAGCAACCACCCGGAGAAAAAAGCCTTAAAAATCAAAGAGATGTACCTCATCAAGCTGCTCTCCACCAAAGTTGCAGTTCATTCTTTTGTGGAGAATCTGTTCAAGAGTATCTGGGGTTTGCCTAATAACAAAGCCCCACTGGCTGTCAAGTACTTTTTCGACTTCCTTGATGAACAAGCAGAGAGAAAAAAGATCACAGATCCAGACGTCCTGCACATCTGGAAAACAAACAGCCTTCCGCTTCGTTTCTGGGTAAACATCCTGAAGAACCCTGACTTTGTGTTCAGTGACATGGAGAAGTCGCCTCATCTGGatggctgtctgtctgtcataGCTCAGGCCTTCATGGACTCCTTCTCTCTAACAGACACACACCTGGACAAGCATTCACCAACCAATAAGCTACTCTACGGGAAAGACATTCCTCAGTACAAACAGGAAGTAAAGTCATACTACAAATTAGTAAAGGACCAGACGTCTATCAGCAGCCAAGAGTTGAAAACGTTCCTCCAAGAGGAGTCAAAGAAACATCAGAATGAGTTCAATGAATCGGCGGCTCTCCGTGAGCTCTACAAATACATGCAGCGCTACTTCACTGAGATTTTTCAGAAGCTGGAGCAGACAGATGCCCCATCTAATCTGAAAGAGAACATGCACAGAGTCAAGGAGCTTTTTGACAACATGAAGCGAAGCGGCTGGAACTGA
>TCONS_00055666
AAAAAGGCAGATAAGTTGAATTTAAATATAAGTGAGGTGAAGGTGGCGGGTTTACATGGAGATAAAGGGTATCAGTGTGTTGTGGAGAGGATTGAATCCAATGCTGTTATCTGTAAGATTAAAGCAGGTCCAGGAGCATTGGATTCACTCAATGTGAGTGTAAAGATTTCTCtatgcaaaataatttttaattaattaaataattgatcAGTAAtaattgcatattttaaataaaacattctctTTTCATGTGATATTTTTCAGATAAGCATTGGTCATTTTTATGTTAAACAAACCTTTGAGTCTCCAAGTGGTATGAagtatttttccatccttgtCGTGTTGATTGTGATCATTATTCTGGGTGCTGTTGGTAAGTGGATTTCAGATTTATGTTGCATATTTTAACATTAGTCCCACATGGATTAATACTGTGTGTTTGTGCTCATCCATGAAGTTGGAGTCATTGTTCATCGAAAGAGCCAGAAACAAATGAGTAAGAAAATGAACGATCAACTGGAACTGATGGAAAGCAACATCAGAAGGGACATAAGGCAAGGCTTTGTTGACTTGCAAACAGAAAAATCGGACTTAATTGATAACGTTGGAGCCATACCTTTCCTGGATTATAAACACTTTGCGTCAAGAATCTTCTTTCCAGAGGTTgaagagttttatttatttaagtttactATTTGATGTTTATCGACTATTATAGACTTTTTAGGCATTTATTCTAAATTATAGATGTTTTTTCTTATATTCTTATATTCTTTAGGCTGGTACTCTAACAGCAGTCATGATTAGAGATATTGGGGAGGACTCTGAGCAAACAACTGTCGATGAGAAATGCCTGGCTTTTGCAGAGCTGATCAGAGATAAGCAGTTTCTCAGTTGTTTTGTGCATGCATTAGAGGAACAGAAAAACTTCAGCATTAAAGACAAATGCACTGTGGCATCTCTATTGACTCTGGCTCTCCACGGAGACCTGCTTTATCTCACAGAAATAATGGAGGATCTTCTGCAGAGTCTGATGGACCAATCCAGCAATGCAAATCCCAAACTTCTCCTGCGCCGCACAGAGTCCATAGTGGAGAAGCTCCTGACCAATTGGATGTCCATCTGTCTTTACGGCTTCCTCAGGGAATCAGTAGGACAACCGTTGTTCCTGCTGGTTTCAGCTTTGACTCAGCAGATCTCTAAAGGCCCGGTGGATTCGGTGACAGAAAAGGCTCTTTATACACTCAGCGAAGATTGGCTTCTCTGCCAAGCGCAGGACTTTGAGCCCCTGAAACTGAAGGTGGTGTTTGCCGTGGGCACTGGAGAAGAGATCAGCGAATCCTTAGAGGTCATCGCACTGACCTGCGACACAATTCAGCAAGTCAAGGAGAAAATCTTACAGACATTTCAGCGCAAGTTTGGTTTCCGCTACACACAGCAGATCAGGGATATAGAAATCGAATATGAGAAGGAAGGAAAGTTTGTCATGCTACAGGAAGTTGATGACACCTCAGAAATTCGAGGGCACGTTACCATGTTAAACACTCTGAAACATTATCAGGTTGGAGATGGAGCATGTATTAAAGTTATTACACCAAAAATTCATGCCCCATTGAAGACTCAAAACAGTGTAAAAGATGATAAGAACTTCTCTATCAAGTACTTCCATCTGGTTGATCCAGATATTGACACGGACTTGAGCAACCACCCGGAGAAAAAAGCCTTAAAAATCAAAGAGATGTACCTCATCAAGCTGCTCTCCACCAAAGTGAGAATAATGGatataaaaagtattttactgcatacgatagatagatggataaatggatggagggaggaagggagggatggatggatggatggatggatggatggatggacagacaaaagAATTGATGGTtgtatggacagatggatgaccAAACAGAAAGTGggactgatgaataaatggatggactggtag

Function

symbol description
plxnc1 Predicted to enable semaphorin receptor activity. Acts upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNC1 (plexin C1).

GO:

id name namespace
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidance biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0050772 positive regulation of axonogenesis biological_process
GO:0030334 regulation of cell migration biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007162 negative regulation of cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0002116 semaphorin receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1620 Predicted to enable semaphorin receptor activity. Acts upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNC1 (plexin C1).

Ensembl:

ensembl_id ENSDARG00000015278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055664 False 3265 mRNA 0.38 13 18281954 18304932
TCONS_00055665 False 3171 mRNA 0.44 27 18283122 18315912
TCONS_00055666 True 1963 mRNA 0.40 10 18289119 18309917

Neighbor

gene id symbol gene type direction distance location
XLOC_028710 uhrf1bp1l coding downstream 794 18207655 ~ 18281160 (-)
XLOC_028708 anks1b coding downstream 79663 17886838 ~ 18202291 (-)
XLOC_028709 BX901882.1 coding downstream 92434 18189406 ~ 18189520 (-)
XLOC_028707 NA coding downstream 399024 17875071 ~ 17882930 (-)
XLOC_028706 avpr2l coding downstream 443775 17836098 ~ 17838179 (-)
XLOC_028712 cradd coding upstream 67341 18383253 ~ 18416566 (-)
XLOC_028713 socs2 coding upstream 116270 18432182 ~ 18436899 (-)
XLOC_028714 sco2 coding upstream 137790 18453702 ~ 18455480 (-)
XLOC_028715 rint1 coding upstream 184100 18500012 ~ 18512550 (-)
XLOC_028716 cdkn1ba coding upstream 276831 18592743 ~ 18595525 (-)
XLOC_028702 BX890572.1 non-coding downstream 544142 17736443 ~ 17737812 (-)
XLOC_028696 NA non-coding downstream 652510 17571295 ~ 17629444 (-)
XLOC_028690 NA non-coding downstream 1065731 17113379 ~ 17216223 (-)
XLOC_028719 dre-let-7b non-coding upstream 337236 18653148 ~ 18653241 (-)
XLOC_028720 dre-let-7a-3 non-coding upstream 338243 18654155 ~ 18654261 (-)
XLOC_028721 NA non-coding upstream 338770 18654682 ~ 18679692 (-)
XLOC_028722 NA non-coding upstream 396851 18712763 ~ 18714926 (-)
XLOC_028730 dre-mir-129-1 non-coding upstream 731554 19047466 ~ 19047555 (-)

Expression


Co-expression Network