G964580


Basic Information

Item Value
gene id G964580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 29824611 ~ 29825010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1099334
atttcgtggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgataaacaacccaaccaagccacactacttcttaacacagcgcacatccaacccggaagccagccgcaccaatgcgccggaggaaacaccgtgcacccggccaccttagcgtacactgcgcccagcccgcaacaggagtcgctggtgcgggatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtctatatctgtctgttcccaagctctgttccctgcttcggGATTGTTTGTCATATGTCCTTGTTTTCCCGTGccctgacgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1099334 True 400 lncRNA 0.56 1 29824611 29825010

Neighbor

gene id symbol gene type direction distance location
LOC118937385 NA coding upstream 1318595 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 1331787 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 1575125 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 1813580 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 1979270 27810049 ~ 27845341 (+)
LOC110535568 LOC106578592 coding downstream 1263854 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 1928859 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 2525672 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 2546451 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 2637415 32462425 ~ 32476477 (+)
G964546 NA non-coding upstream 23358 29801053 ~ 29801253 (+)
G964510 NA non-coding upstream 44720 29779675 ~ 29779891 (+)
G964491 NA non-coding upstream 57101 29767231 ~ 29767510 (+)
G964072 NA non-coding upstream 335062 29489332 ~ 29489549 (+)
G964061 NA non-coding upstream 340663 29483744 ~ 29483948 (+)
G964591 NA non-coding downstream 4796 29829806 ~ 29882054 (+)
G964994 NA non-coding downstream 290067 30115077 ~ 30119051 (+)
G964995 NA non-coding downstream 291345 30116355 ~ 30120507 (+)
G964999 NA non-coding downstream 295789 30120799 ~ 30121207 (+)
G965000 NA non-coding downstream 297889 30122899 ~ 30123123 (+)
G962100 NA other upstream 1595210 28227528 ~ 28229401 (+)
G961984 NA other upstream 1883036 27897166 ~ 27941575 (+)
G961864 NA other upstream 1995434 27828746 ~ 27829177 (+)
mtpap LOC106578552 other upstream 2059197 27739381 ~ 27765414 (+)
G965838 NA other downstream 993828 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 3559033 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 3633351 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 3778037 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 3779503 33604513 ~ 33604810 (+)

Expression


Co-expression Network