G965709


Basic Information

Item Value
gene id G965709
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 30665776 ~ 30666713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1100507
gactgacccaccaccaaaccggtcatgctggaggatgttgcaggtagcagaacattctccacggcgtctccagactctgtcacgtaattcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacatcctgcgcggtgttgggctgtaagcacaacccccacctgtggacgtcgggcactcataccaccctcatggagtctgtttctgaccgtttgagcagacacatgcacatttgtggcctgctggaggtcattttgcagggctctggcagtgcttctccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtggtcaccacctgcagaaccactcctttattgggggtgtcttgctaattgactataatttccacctgttgtgtattccatttgcacattcaacaatgtaaagaaaaaagtatttaataagaatatttaattcattcttatctaggatgtgttattttagtgttccctttatattTTTGAGCAGTAGAAGCGATttgaataatggctacctctgtattttacgcaataatttctctgggagcatcaggtgaccacttgcgcaatgaagCCGCCtccgggtattcttcaacataaatgcgtaaaactctgtcacaatgctgtagacaccttggggaatatagggcattcacagctcaatagggacacatCGGAATGCAgggctttcaaaagatgagtcacttccggtttggatttttctcagtctttcgcctgtaacatcagttctgttatactcagagacaatattttttacagttttggaaactttatagtgttttctgtcctaagctgtcaattatatgcatattctagcatcttgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1100507 True 938 lncRNA 0.44 1 30665776 30666713

Neighbor

gene id symbol gene type direction distance location
LOC118937385 NA coding upstream 2159760 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 2172952 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 2416290 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 2654745 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 2820435 27810049 ~ 27845341 (+)
LOC110535568 LOC106578592 coding downstream 422151 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 1087156 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 1683969 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 1704748 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 1795712 32462425 ~ 32476477 (+)
G965695 NA non-coding upstream 8719 30656844 ~ 30657057 (+)
G965664 NA non-coding upstream 26626 30638912 ~ 30639150 (+)
G965638 NA non-coding upstream 40405 30625159 ~ 30625371 (+)
G965617 NA non-coding upstream 55952 30609608 ~ 30609824 (+)
G965612 NA non-coding upstream 59284 30606290 ~ 30606492 (+)
G965726 NA non-coding downstream 13053 30679766 ~ 30680062 (+)
G965730 NA non-coding downstream 18064 30684777 ~ 30685102 (+)
G965740 NA non-coding downstream 23422 30690135 ~ 30690400 (+)
G966224 NA non-coding downstream 404560 31071273 ~ 31071514 (+)
G966244 NA non-coding downstream 415892 31082605 ~ 31082821 (+)
G962100 NA other upstream 2436375 28227528 ~ 28229401 (+)
G961984 NA other upstream 2724201 27897166 ~ 27941575 (+)
G961864 NA other upstream 2836599 27828746 ~ 27829177 (+)
mtpap LOC106578552 other upstream 2900362 27739381 ~ 27765414 (+)
G965838 NA other downstream 152125 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 2717330 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 2791648 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 2936334 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 2937800 33604513 ~ 33604810 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G311844 NA non-coding CI01000095 null 5122082 ~ 5127163 (-)