G966224


Basic Information

Item Value
gene id G966224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 31071273 ~ 31071514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1101036
GCTTTTGTGCGGCTACTCTAAGATCACCatatgcaatgccaagcgtcggctttagtggtgtaaagctcgctgccattggactcttgagcagtggaaacacgttctctggagtgatgaagcacgcttcaccatctggcagtctgacggacaaatctgccccaatgcatagtgccaactgtaaagtttggtggaggaggaggaataatggtctggggctgtttttcatggttcgggcttggccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1101036 True 242 lncRNA 0.51 1 31071273 31071514

Neighbor

gene id symbol gene type direction distance location
LOC118937385 NA coding upstream 2565257 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 2578449 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 2821787 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 3060242 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 3225932 27810049 ~ 27845341 (+)
LOC110535568 LOC106578592 coding downstream 17350 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 682355 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 1279168 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 1299947 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 1390911 32462425 ~ 32476477 (+)
G965740 NA non-coding upstream 380873 30690135 ~ 30690400 (+)
G965730 NA non-coding upstream 386171 30684777 ~ 30685102 (+)
G965726 NA non-coding upstream 391211 30679766 ~ 30680062 (+)
G965709 NA non-coding upstream 404560 30665776 ~ 30666713 (+)
G965695 NA non-coding upstream 414216 30656844 ~ 30657057 (+)
G966244 NA non-coding downstream 11091 31082605 ~ 31082821 (+)
G966257 NA non-coding downstream 59918 31131432 ~ 31132261 (+)
G966308 NA non-coding downstream 99853 31171367 ~ 31172251 (+)
G966323 NA non-coding downstream 127745 31199259 ~ 31199820 (+)
G966325 drosha non-coding downstream 130160 31201674 ~ 31214886 (+)
G965838 NA other upstream 250021 30818838 ~ 30821252 (+)
G962100 NA other upstream 2841872 28227528 ~ 28229401 (+)
G961984 NA other upstream 3129698 27897166 ~ 27941575 (+)
G961864 NA other upstream 3242096 27828746 ~ 27829177 (+)
LOC110536614 LOC106578612 other downstream 2312529 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 2386847 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 2531533 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 2532999 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 2722861 33794375 ~ 33795061 (+)

Expression


Co-expression Network