Gene
RNA
| Item | Value |
|---|---|
| gene id | G966409 |
| gene name | drosha |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 31296272 ~ 31301742 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| drosha | Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Acts upstream of or within with a positive effect on primary miRNA processing. Acts upstream of or within angiogenesis. Predicted to be active in nucleus. Orthologous to human DROSHA (drosha ribonuclease III). |
| description |
|---|
| ribonuclease 3 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1101242 | True | 442 | lncRNA | 0.55 | 4 | 31296272 | 31301742 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535568 | LOC106578592 | coding | upstream | 126289 | 31088864 ~ 31169983 (+) |
| LOC118937385 | NA | coding | upstream | 2790256 | 28499110 ~ 28506016 (+) |
| LOC110536610 | NA | coding | upstream | 2803448 | 28491651 ~ 28492829 (+) |
| LOC110535556 | LOC106578558 | coding | upstream | 3046786 | 28132122 ~ 28249912 (+) |
| svila | LOC106578556 | coding | upstream | 3285241 | 27867026 ~ 28011031 (+) |
| LOC110535570 | LOC106578590 | coding | downstream | 452127 | 31753869 ~ 31790306 (+) |
| LOC110535575 | LOC105028291 | coding | downstream | 1048940 | 32350682 ~ 32354712 (+) |
| LOC110535577 | LOC106578587 | coding | downstream | 1069719 | 32371461 ~ 32390805 (+) |
| LOC110535578 | LOC106578586 | coding | downstream | 1160683 | 32462425 ~ 32476477 (+) |
| ppp1r3g | LOC106578584 | coding | downstream | 1181402 | 32483144 ~ 32485710 (+) |
| G966364 | NA | non-coding | upstream | 47861 | 31243226 ~ 31248411 (+) |
| G966325 | drosha | non-coding | upstream | 81386 | 31201674 ~ 31214886 (+) |
| G966323 | NA | non-coding | upstream | 96452 | 31199259 ~ 31199820 (+) |
| G966308 | NA | non-coding | upstream | 124021 | 31171367 ~ 31172251 (+) |
| G966257 | NA | non-coding | upstream | 164011 | 31131432 ~ 31132261 (+) |
| G966424 | NA | non-coding | downstream | 26467 | 31328209 ~ 31328633 (+) |
| G966425 | NA | non-coding | downstream | 31946 | 31333688 ~ 31333900 (+) |
| G966584 | NA | non-coding | downstream | 35602 | 31337344 ~ 31337563 (+) |
| G966623 | NA | non-coding | downstream | 83301 | 31385043 ~ 31385286 (+) |
| G966681 | NA | non-coding | downstream | 104053 | 31405795 ~ 31406170 (+) |
| G965838 | NA | other | upstream | 475020 | 30818838 ~ 30821252 (+) |
| G962100 | NA | other | upstream | 3066871 | 28227528 ~ 28229401 (+) |
| G961984 | NA | other | upstream | 3354697 | 27897166 ~ 27941575 (+) |
| G961864 | NA | other | upstream | 3467095 | 27828746 ~ 27829177 (+) |
| LOC110536614 | LOC106578612 | other | downstream | 2082301 | 33383589 ~ 33386375 (+) |
| LOC110535592 | lmbr1 | other | downstream | 2156619 | 33411705 ~ 33473890 (+) |
| G969455 | LOC106578609 | other | downstream | 2301305 | 33603047 ~ 33603674 (+) |
| G969456 | LOC106578609 | other | downstream | 2302771 | 33604513 ~ 33604810 (+) |
| G969752 | LOC106578632 | other | downstream | 2492633 | 33794375 ~ 33795061 (+) |
