XLOC_002872 (trim37)


Basic Information

Item Value
gene id XLOC_002872
gene name trim37
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32809620 ~ 32851847 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005315
TAATGCTTATACTTTCGGCTACCAAACGTGCATTCGATTGGTGGATACGGTCTCCCATGGTGACTGACACGGTCTCCCATGGTGACTGGCATTGACATATAGGCGCTATTCGCTGCTTGCTGCTAGTCCATAAACAAGCAGTCCGATGTTGAAATACCCGGTTTAAAAACACTAAACCAGTAGCGTTTGATGCAGACATCTGCAGTGACGGGTTCGAGGGTGACATTAAAAGTGAAGGCACCAGGATTCTCCCATCAGGTTTATTTGGCTGTTTGGAAGTAAACCTGGCTGAGATGGATGAGCAGAGTGTTGAGAGCATAGCGGAGGTCTTCCGCTGCTTCATTTGCATGGAGAAGCTGCGTGATGCCCGTCTCTGCCCTCACTGCTCCAAACTGTGCTGTTTCAGCTGCATACggCGATGGCTGACAGAGCAGAGAGCCCAGTGTCCCCACTGTCGAGCTCCGCTACAGCTGAGGGAACTGGTCAACTGTCGCTGGGCAGAGGAAGTGACTCAACAGCTGGACACACTGCAGCTCTGCAACCTCACAAAACATGAGGAGAACGACAAAGACAAGTGTGAGAACCATCATGAGAAGCTGAGTGTGTTCTGCTGGACTTGTAAGAAGTGCATCTGTCACCAGTGCGCGCTGTGGGGAGGCATGCATGGCGGTCATACGTTCAAACCCCTGGCTGAGATCTATGAGCAGCATGTGACGAAGGTGAACGAGGAGGTGGCCAAGCTGCGGCACCGGCTAATGGAGCTCATTAGTCTGGTTCAAGAAGTGgagaagAACGTTGAGGCAGTACGAGGAGCGAAGGATGAGAGAGTGAGGGAGATCCGGAATGCTGTGGAAATGATGATCGCTCGGCTTGATAATCAGCTTAAGAATAAACTCATCACACTCATGGGACAGAAGACCTCTCTGACACAGGAAACGGAACTGCTGGAGTCTCTGCTGCAGGAAGTGGAGCATCAGTTGCGTTCATGCAGTAAGAGTGAACTGATCTCGAAGAGTCCAGAGATCCTGCTCATGTTTCAGCAGGTACACAGGAAACCAATGCAGTCGTTCGTCACCACTCCTGTCCCGCCAGACTTTACCAgTGAGCTGGTCCCTGCGTATGACTCCAGCACTTTTGTTTTGGCAAACTTCAGTACTCTGCGGCAGAGAGCTGACCCTGTTTACAGCCCCCCACTACAGATATCAGGCCTGTGCTGGAGGTTGAAGGTTTATCCAGATGGCAATGGTGTCGTTCGAGGAAActatctgtctgtttttctgGAGCTGTCAGCAGGACTTCCTGAGACTTCTAAATATGAATACAGGGTGGAGATGGTCCATCAGGCCTCCAGTGACCCCACCAAAAATATCATTCGAGAGTTTGCATCAGACTTCGAGGTGGGCGAGTGCTGGGGATATAACAGGTTCTTCAGGTTGGACCTTCTCGCCAGCGAGGGCTACTTGAATATGCAGACTGACACACTTGTTCTAAGGTATCAAGTGCGATCGCCTACATTTTTTCAGAAGTGTAGAGATCAGTATTGGTATATAACTCAGCTGGAGTCCGCCCAGTCCAGCTACATTCAACAAATCAATAACTTAAAAGAGAGGTTGGCCATAGAACTGTTCCGTCGGCAGAAGTCACGAAGCTCGTCTCCACCTGATCGGCGTCTCTGTCCCACCACATCCTCTGGCAGAGACTCTCGTCAGGGGAAGAGCTCCGTGCTGGAGGAGTGCAGTCAGGCAGCCTCAGTAGAGACAAAGGAAGATGAGGATGAGGAGAAAACCCAGCATGATGACTCTAATGAGTTGTCTGATGGCGATCTGGAGGTGGACTGTCTAACTGGAGACGAAGATGTCAATCCTCTGGATGGTAGCAGCACTTCTGGAAGCTCCACAGCCACCAGCAATACAGAGGAGAATGATATCGACGAGGAGACAATGTCCGGAGAGAATGACGTGGAGTACAGCAGGAATCTGGAGCTGGAGGAAGGAGAATTAGCTGATGATGTTGCCGGAGCTGCAGGAGGTTCTGGTGCAGGTGTCCGGGGCTCAAGACGAGGGGCAGGAGCCAGCTCTGCCAGCCTCCTGGAGATCGACCCTGTCATCCTCATCCAACTCCTGGACCTGAAGGACCGAAGCCATGTGGAGTCACTGTGGGGGATGCAACCCCGTCCCCCTACCTCTCTGCTTCAGACCCAAGCTGCTGCGGTGCCGTCTCGTAAAGAGCGTGAGCGTCGGCCTCAGGCGGTGCGCCGGTCGGCACCAGACTCTGGTGTGCTGATCAGACTGAAGGCGCAGATGGCAGAAGTGCGCAGTAAGATGTCAGATGTGAAAGGCCAGCTGGAGGCTCGCAGTGGCGCCACTCGGGTCTCCTCTCACGGAGCCTCAATCCACGAGCAGGGCCCCTCCATGGACACAGAGCTGGGGCCTAGCCGAAAACCCAGCGAGCTGCTCTTCAAAGCACCAATCTCTTCACGACACACTCGCAGTGGTGGAAAGAAGTCTGGTTCCCCCAAGCAGGAGAGTGTGGGGGCTCTGGGTGTTCTGTCCCTGCGCAGGACTGTGGATGCTGGAGAGAAGGAGCTCAGAGGAGCCGGACGAGAGTCTCCAACTGAACCTGCTACAACTGGACCCTCCTCTTTGGATGGCTCTCTGAAAGCGCGCAGTGTTCAGAGTTCTCCTCCCTCTCTGGGAAGCAGCTCCTCATCCTCTGATAAGGCCTCTGGCTCCAAACACGAGGATCTGCTGTATGGAGCTTCAGACCTGTTCAGCATCGCTGCTCTCAATGGAGCGTCTGCACCCGCCACCAAACAGCACAGAGCTACAGCGATCGGGCCTGGGCTGCTGACGGACAGCTCTCTGACCTGTGACCTAGAGAGCGCCGGCGAGATCCATCAGTCACTTCTGTCACTGGCTGAACCATCTTCCTCTTCCTCATCGCACCCTGATGAAGGTGTGCTTAGTCAGAAGCCTCATCATGTGTTGCCCAGCATGAGCAGTGACAGTGAGCTGGACTGCGACACAGAGAATGAGAACGAGGATGAAGTGGTGCCTCTGGAGGCTGGAGACACCAGTGCGTTTGACACCAGAACTCTGCCCTGCACAGGTGAGCAGCTGATCCCTGATGATCTGAGTTTCACGGCTGAGGAAAGTACAGAAAGATGATTTCTTAAACGCCGTGACGTGACGCCTCCTGAGTTGAATGTCCTCTTTACTTTTATGTCTGTGCACTTATTTATGTTCCTATAGAGCGGAATTCTATGTTTCTGTGTGCTACTATGTATGCTATTTCAGAAAAACGCCACTTTCAGGATGAGCGAGAGAGCATTTCCTTTATTCGCTATGGATTATAAAAGCGTAACATTCCGTTATGAACACAAAGGTGTATAGTTTATGTGCTTAACTTGATGATAATCATTTTAGAGTTATATATACTACATTATTTTGTTCGGTGCTGCTTATTATAGTAAGTTTATAGGGAGATGACAAACAAAGTTAAGCTGTTTGTTTGTCCGTTTAAAGTTAATAAGTCTATTTCTACcacgaaataaaaaaaattgtgactaTCTCAAAAGTCAGATATTTTTTTCTTACAATTctcaaaaatgtgttgtttttttctcaaaattaaaagattaaaatccTAAATCTGACTTTTGTgtcaattaaaatacattttcactttCTCTTAACTTTTATAATTGCGGTATGTTAACTCTATAGATGTTAACTcctattttgtttatattttgcgCATATCTGATTTAAACAGTCACAATTGTTATCTCCTGGCAGAaagagtttttatttgttatttttcagtTAAAGAATGTTAATACAGGTGCTGCTCTGTTACCATTTCACCTAACTTTATTCTCCGTGCAGATTATTTATAGATAttagtacattttttttcttattttacttCGACCATATGGACACTAATCTGTCCAATCCACCAATCAACTGAACAAGTTTACACTGACTAAATGTCTGCAAAAAGGGAACGTTGAGCCGATAAAAGTTCAAAtaacattctctctctctcgcagTGATGTGATTGTTCTTATAAAGTACAAATATGACTTATTTCGCATTGCACAGCTCACTTATGAATTTAGTACATtcccattattattgttttagtcattatttTAACCAATGTTAACTCCCTACTAGATAATAAAAGGTAGTTACAAACTTTAATAACCAAAGTCTCAGGTGGGTCCAAGTGTGGATGTCGCAGCGTTTATGTTGCGAACAAACATCATAGCATTGTCAACAGCTGGAGCTTGCTGCATGCACCGCTTTCCGCTCAGTACAGTCTGCTAAATATGTGACATTTTGGTTGTAAAGTGTACAGCAAGTAATGCTTTTGCTGTTTAATCGCTGGGTTAAGATTTAACAACAGGTCAGTTTCTTTCCCCTCAAGCATGTTTATGGTCTCTGCAAAGCCTAAAGCAGTGTTAACGGTGTTCCTGTAGCCATTCAATGTTAATCTAATGCTGTTCTTTGTGCTGTAACAATAATAAGAGTATTAATTGTATGTTCATTTGAGGAACAAAAAGGCAGTCTGTTTGCTGTGCACACTTCCTGtttacttttctttctttccttctttctttctttctttctagcatgtttataaaaaattttatttgggCCCAAAACAAACTGGAGTAAAtggtatgtactgtatatttatctaaattaaaatcttaacaaataaa

Function

symbol description
trim37 Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of centriole replication; protein ubiquitination; and regulation of DNA-binding transcription factor activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be active in aggresome and peroxisome. Human ortholog(s) of this gene implicated in mulibrey nanism. Orthologous to human TRIM37 (tripartite motif containing 37).

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0046600 negative regulation of centriole replication biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0005777 peroxisome cellular_component
GO:0016235 aggresome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-2957 Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of centriole replication; protein ubiquitination; and regulation of DNA-binding transcription factor activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be active in aggresome and peroxisome. Human ortholog(s) of this gene implicated in mulibrey nanism. Orthologous to human TRIM37 (tripartite motif containing 37).

Ensembl:

ensembl_id ENSDARG00000076473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005315 True 4732 mRNA 0.47 25 32809620 32851847

Neighbor

gene id symbol gene type direction distance location
XLOC_002871 NA coding downstream 29330 32779880 ~ 32780290 (-)
XLOC_002870 NA coding downstream 131375 32676810 ~ 32678245 (-)
XLOC_002869 atg101 coding downstream 145861 32657496 ~ 32663759 (-)
XLOC_002868 umodl1 coding downstream 169679 32613706 ~ 32639941 (-)
XLOC_002866 mogat2 coding downstream 198844 32534814 ~ 32610776 (-)
XLOC_002873 rabgef1 coding upstream 3054 32854901 ~ 32880298 (-)
XLOC_002874 kctd7 coding upstream 29739 32881586 ~ 32890617 (-)
XLOC_002875 NA coding upstream 43150 32894997 ~ 32896944 (-)
XLOC_002876 cux1a coding upstream 46686 32898533 ~ 33156789 (-)
XLOC_002877 NA coding upstream 306742 33158589 ~ 33164573 (-)
XLOC_002867 NA non-coding downstream 218158 32584685 ~ 32591462 (-)
XLOC_002863 NA non-coding downstream 558774 32216413 ~ 32250846 (-)
XLOC_002862 NA non-coding downstream 724996 32077811 ~ 32084624 (-)
XLOC_002883 dre-mir-454a non-coding upstream 524971 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a non-coding upstream 525154 33377001 ~ 33377086 (-)
XLOC_002885 dre-mir-130a non-coding upstream 525283 33377130 ~ 33377214 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15859896_15879052 TRIM37 coding CI01000304 null 15859117 ~ 15879376 (-)
bowfin (Amia calva) AMCG00005422 trim37,LOC103132205,LOC106941548 coding CM030142.1 CM030142.1 1408433 ~ 1425336 (+)