XLOC_028720 (dre-let-7a-3)


Basic Information

Item Value
gene id XLOC_028720
gene name dre-let-7a-3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18654155 ~ 18654261 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055684
GAGACTGTCGTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGAGGGTTTAACCCTTGCTGTCAGATAACTATACAACTTACTGTCTTTCCCGAAGTGGCCGTAGTGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000082287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055684 True 107 miRNA 0.46 1 18654155 18654261

Neighbor

gene id symbol gene type direction distance location
XLOC_028719 dre-let-7b coding downstream 914 18653148 ~ 18653241 (-)
XLOC_028718 pparaa coding downstream 19150 18609539 ~ 18635005 (-)
XLOC_028717 CDPF1 coding downstream 47582 18597162 ~ 18606573 (-)
XLOC_028716 cdkn1ba coding downstream 58630 18592743 ~ 18595525 (-)
XLOC_028715 rint1 coding downstream 141605 18500012 ~ 18512550 (-)
XLOC_028721 NA coding upstream 421 18654682 ~ 18679692 (-)
XLOC_028722 NA coding upstream 58502 18712763 ~ 18714926 (-)
XLOC_028723 atxn10 coding upstream 66524 18720785 ~ 18742106 (-)
XLOC_028724 def6c coding upstream 105028 18759289 ~ 18775548 (-)
XLOC_028725 cbll1 coding upstream 182530 18836791 ~ 18851365 (-)
XLOC_028709 BX901882.1 non-coding downstream 464635 18189406 ~ 18189520 (-)
XLOC_028707 NA non-coding downstream 771225 17875071 ~ 17882930 (-)
XLOC_028702 BX890572.1 non-coding downstream 916343 17736443 ~ 17737812 (-)
XLOC_028696 NA non-coding downstream 1024711 17571295 ~ 17629444 (-)
XLOC_028730 dre-mir-129-1 non-coding upstream 393205 19047466 ~ 19047555 (-)
XLOC_028731 NA non-coding upstream 614124 19268385 ~ 19369785 (-)
XLOC_028733 NA non-coding upstream 880200 19534461 ~ 19539090 (-)

Expression


Co-expression Network