XLOC_028723 (atxn10)


Basic Information

Item Value
gene id XLOC_028723
gene name atxn10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18720785 ~ 18742106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055685
atggggaaaaaacaaTTACCATTTAATACATTTGGATTGTTATGTTTATGTTGTTATCACATTTACATAATCGAAATAACAcgagcttttattttgaaaaccagTGTAGCCGGTAGACGGAAGTTGGGGTCTGCATTTACTCGCGCGCGCGTGTTGATTATGGCAGGCTCCGGTGACAGCATGCAGAACATAAACAACACACTTAGTGAAATAACCTGTGAAAAACTTACAAACACGCATCTCGAAGCTTTACAAACCCTGACGAGCGCTTTCAGAGATGAGCAGTTCAGAGGCAGTGTTGACAGGGAGGTTTTTGGAAATCTCTCTGCGGTGCTGTCAAGGCTTTCTGTGGATGTCCAACGTTTGACAGATGAGACAGAATCACAGGAGGGAGAAGCATCATCTCTGTGCTTTAAACTCACAGCAGAGTGTTTCAGAGCGCACAGAAATGCCTGCGTGCAATGCACTCAAAACCAGTGCAGTCTGAGAGATCTAGGCTCTATCAAGCGATCTTTTGAGATTTTATCCAATCTCATCAAGATTTCATCCAGAGGTTCAAATGACATTTATGACGCGCTTCGATGTGGAATTCAGTTTCTTGGTAACATTGCTGTAGGAAACCAGCTCTGCAAAGATGACATCTGGGAGTTTGGTTTCCCACATATCTTTTGgGACATTTTGCAGCTCCCTGATGAAAAATCCATTTCATATACGTGTATGGTGATCCACACTTGTCTGGATGAACACAAGACGGAGCAGTTTGTTGAAGATACACAACGGCTTAAACTGACTCTGAAGATCATGGACTTGTGCAGGACTTTGCCTGATCTAGACTGGACGGTCTTTATTGTCACACAGCATTTCCTCAAGTCTACAGAGCTCATTAGGAAGATGTACACTGAGATGACCAATGAGGAAAGACTCACACTACTGGAGCTGATATTAGCACAGCTTGGTGTTGTTGAAGAGCAGAAGGACTGTTTGATGCCTCTGAGTGCTGCTCAATTTCTGGCTTCCTGCTTCACTGATCACGGCAGAACTGttctcagtctgagctctgaaGCATCTGATAACCAGGCAGCATTGGTTATCATCTGGCTTTTAGACATCCTTTGCGAGATGACCTCTGACCGAAAAGAGTTTATGTCACTACAGGATCACCCTGACCTTCTGAGCGCCACAGTCGATCTCCTGAAAGAGATTCACCTACTGGGCAAAAACAGTAGAAATGTGTTCACGGCAGCACATAATTTCACCTTGACAAGGCCAGAGGGCGCCGAGACCCACCCGGTCCTCAGTTTCAAAGCCCATCTCATTCGTCTGATTGGGAACTTGTGTCACGGACATGTTGTCAACCAAGACAAGGTTAGAGAAATGGATGGTATAGCTCTCATTCTGGACAACTGCAGCATTGACAGCAACAATCCCTTCATAAGCCAATGGGCTGTATTTGCCATACGGAACATCCTGGAGCACAACCTGGAAAATCAGAAGCTGATTCAAGGCCTTCGAAGACAAGGTTTGGCAGACGACACAATGCTCAGAGGCATGGGCTTCAGGGTGGAAGAAAGGGATGGCAGTTTGCTCCTCAGGCCCCTTAAAAAGGACCCATAGCTTGTTAAGTAGATCTGCCCTGGGATGCCCATCCCCACACTATATTACTCCCTTGAGATGCCTTTAAAACACCCACAGAACACACTGGGG
>TCONS_00055686
AGGCTCCGGTGACAGCATGCAGAACATAAACAACACACTTAGTGAAATAACCTGTGAAAAACTTACAAACACGCATCTCGAAGCTTTACAAACCCTGACGAGCGCTTTCAGAGATGAGCAGTTCAGAGGCAGTGTTGACAGGGAGGTTTTTGGAAATCTCTCTGCGGTGCTGTCAAGGCTTTCTGTGGATGTCCAACGTTTGACAGATGAGACAGAATCACAGGAGGGAGAAGCATCATCTCTGTGCTTTAAACTCACAGCAGAGTGTTTCAGAGCGCACAGAAATGCCTGCGTGCAATGCACTCAAAACCAGTGCAGTCTGAGAGATCTAGGCTCTATCAAGCGATCTTTTGAGATTTTATCCAATCTCATCAAGATTTCATCCAGAGGTTCAAATGACATTTATGACGCGCTTCGATGTGGAATTCAGTTTCTTGGTAACATTGCTGTAGGAAACCAGCTCTGCAAAGATGACATCTGGGAGTTTGGTTTCCCACATATCTTTTGgGACATTTTGCAGCTCCCTGATGAAAAATCCATTTCATATACGTGTATGGTGATCCACACTTGTCTGGATGAACACAAGACGGAGCAGTTTGTTGAAGATACACAACGGCTTAAACTGACTCTGAAGATCATGGACTTGTGCAGGACTTTGCCTGATCTAGACTGGACGGTCTTTATTGTCACACAGCATTTCCTCAAGTCTACAGAGCTCATTAGGAAGATGTACACTGAGATGACCAATGAGGAAAGACTCACACTACTGGAGCTGATATTAGCACAGCTTGGTGTTGTTGAAGAGCAGAAGGACTGTTTGATGCCTCTGAGTGCTGCTCAATTTCTGGCTTCCTGCTTCACTGATCACGGCAGAACTGttctcagtctgagctctgaaGCATCTGATAACCAGGCAGCATTGGTTATCATCTGGCTTTTAGACATCCTTTGCGAGATGACCTCTGACCGAAAAGAGTTTATGTCACTACAGGATCACCCTGACCTTCTGAGCGCCACAGTCGATCTCCTGAAAGAGATTCACCTACTGGGCAAAAACAGTAGAAATGTGTTCACGGCAGCACATAATTTCACCTTGACAAGGCCAGAGGGCGCCGAGACCCACCCGGTCCTCAGTTTCAAAGCCCATCTCATTCGTCTGATTGGGAACTTGTGTCACGGACATGTTGTCAACCAAGACAAGGTTAGAGAAATGGATGGTATAGCTCTCATTCTGGACAACTGCAGCATTGACAGCAACAATCCCTGTATCCTTTTGTG

Function

symbol description
atxn10 Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 10. Orthologous to human ATXN10 (ataxin 10).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko05017 Spinocerebellar ataxia

ZFIN:

id description
ZDB-GENE-060503-180 Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 10. Orthologous to human ATXN10 (ataxin 10).

Ensembl:

ensembl_id ENSDARG00000008439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055685 False 1704 mRNA 0.46 11 18720785 18742106
TCONS_00055686 True 1278 mRNA 0.46 10 18726048 18741942

Neighbor

gene id symbol gene type direction distance location
XLOC_028722 NA coding downstream 5859 18712763 ~ 18714926 (-)
XLOC_028721 NA coding downstream 41093 18654682 ~ 18679692 (-)
XLOC_028720 dre-let-7a-3 coding downstream 66524 18654155 ~ 18654261 (-)
XLOC_028719 dre-let-7b coding downstream 67544 18653148 ~ 18653241 (-)
XLOC_028718 pparaa coding downstream 85780 18609539 ~ 18635005 (-)
XLOC_028724 def6c coding upstream 17183 18759289 ~ 18775548 (-)
XLOC_028725 cbll1 coding upstream 94685 18836791 ~ 18851365 (-)
XLOC_028726 rap1b coding upstream 110715 18852821 ~ 18939338 (-)
XLOC_028727 si:dkey-31f5.8 coding upstream 210376 18952482 ~ 18965164 (-)
XLOC_028728 si:dkey-31f5.11 coding upstream 243423 18985529 ~ 19028861 (-)
XLOC_028709 BX901882.1 non-coding downstream 531265 18189406 ~ 18189520 (-)
XLOC_028730 dre-mir-129-1 non-coding upstream 305360 19047466 ~ 19047555 (-)
XLOC_028731 NA non-coding upstream 526279 19268385 ~ 19369785 (-)
XLOC_028733 NA non-coding upstream 792355 19534461 ~ 19539090 (-)
XLOC_028736 NA non-coding upstream 1157909 19900015 ~ 19901133 (-)
XLOC_028741 NA non-coding upstream 1302761 20044867 ~ 20047884 (-)

Expression


Co-expression Network