XLOC_028724 (def6c)


Basic Information

Item Value
gene id XLOC_028724
gene name def6c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18759289 ~ 18775548 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055687
ATGGATCTAAAAAGCGAGTTGCTGAAGTCTGTCTGGTACGCGTTCACGTCTCTAGATGTGGAGCAGAGCGGAAAAGTTTCCAAGTCGCAACTGAAGGTCCTGTCGCACAATCTTTATACAGTGCTAAATATTCCTCATGATCCTGTGGCGTTAGAAGAGCACTTTAAGGACAATAACAATGGGCCCGTGTCCAGCCATGGCTACATGCCCTACCTCAACAAATACATTTTGGCAAAGGTCATTGATGGGACATTTAATAAGGAAATATTTGATGAGCTGTGCTGGACAATGTCTTCAAAGAAGAACTGCAAACCTAGCGTTCAGCAGGGTCTGTGTTCACAGAGAGACTGTTTTAAACTCTTCTGCCTGTTCAACCTACTCTCTGAAGACCGTTACCCATTAGTCATTATTCAACCGGAGTTGGAGTACCTGCTGAAGAAAATCTCCAGTGCAATGAGCTTGGAGTGGGACAGCACATTACTGGAGGAACTTTTGTCAAAGAATGTTGATCTTCAGGATGGCGTGTCAGTGTGGGAGTTTTTGGAGCATTTGAGCGCAGGCCAGCTTTTGCACGTCGAGAGCAAAGAGGCCTTCAGTCTCGCTGTGGACGAAGTTTTCATGGAAATGTACCACAGCATCATCAAAAAGGGTTACCTGGTAAAGAAGGGGCATGTTCGCAGGAACTGGCAGGAGCGGTGGTTTGTTTTGAAGCCCGGCAGCCTCATATATTATGTTGCCGAAGACCAGAAAGAGAAGAAAGGAGAAATCCTGCTAGAGGAGAGCAGTGTAGTGGAGAGTGTTCCTGATAAAGAAGGCCGAAGATGCCTGTTTTGTGTGAAAACTTCAGTGAGGACCTATGAAATGAGTGCTTCAAACCTAAAGCAGAGAGTAGACTGGATGCAAGCTATTCAGATGGCTTTCAGGTTAAGGGCTGAGGGTAAGAGCTCTCTACATCAGGACCTGAAACTGAGCAGACGCAAGCAGAGAGAAACCCTTCAGAGAAGCCAGAGCAACCAGAGCACTCACAATGAGTCCAGTGCAGTGGAGGCGTCGCAACACTCTGCTCCAGAACAGCAGGGGGAGACAGAGAGCTTAGAGCAGCACATAGAGAGCATTATTCAGAAACAGAGGGAGGTGGAGGCAAAGTGTAAAGAGGAAGAGAAGCAAGAGCATGAGAAACAGCAGGCCATACAGAGAGATCTGGAGAAGCAGCTTGAAGAAGCTAAAGAGGCTAATGAAAAGATGACAATGACGTTGACTGAGATGGAGAAGGAAGTGCAGCAGCACAAGAAGAGAATCAATGAATTGGAGCTCACACAGGTTAAACTGGAGGAGGCGCTCAACACCCAGATTCACGCACGCTTAGAAGAGGACAGAGCCCGACAGGAGCTGGAGAGGCAGCTTGCAGAGGAGCAGAAGAAACTTGCAGATCTTCTCCTTCTTCAGCAGCAGATGCAAACGGCTTCTGTTAGGGTGCAAGTAGAGCCACAGATAAATGATGATACTTCAGTTGAAGCAGCTCCCATCAGTCAACATGCAGAGGAGAGCAGTCAACAAAACACTGTGGAGCCTCTTATTTCTGAAACGACTTTCGCTTCAACACCACCAAACGTCCAGCAACCAGAGGAGAGCCACCAGTACACCACAGagAGAGAATTGGAGAATCAGTCTTCAACTCAAATGATGAAACACTGGAAAATACAGCTAAACCGCCTGATGAAGCCTATCGCACCAGGAGACAAAGCGGAGCATTTGCCGGTAAAGAGCGGTTGTCCCA

Function

symbol description
def6c Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-87 Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000034717

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055687 True 1777 mRNA 0.47 13 18759289 18775548

Neighbor

gene id symbol gene type direction distance location
XLOC_028723 atxn10 coding downstream 17183 18720785 ~ 18742106 (-)
XLOC_028722 NA coding downstream 44363 18712763 ~ 18714926 (-)
XLOC_028721 NA coding downstream 79597 18654682 ~ 18679692 (-)
XLOC_028720 dre-let-7a-3 coding downstream 105028 18654155 ~ 18654261 (-)
XLOC_028719 dre-let-7b coding downstream 106048 18653148 ~ 18653241 (-)
XLOC_028725 cbll1 coding upstream 61243 18836791 ~ 18851365 (-)
XLOC_028726 rap1b coding upstream 77273 18852821 ~ 18939338 (-)
XLOC_028727 si:dkey-31f5.8 coding upstream 176934 18952482 ~ 18965164 (-)
XLOC_028728 si:dkey-31f5.11 coding upstream 209981 18985529 ~ 19028861 (-)
XLOC_028729 lepb coding upstream 256220 19031768 ~ 19033805 (-)
XLOC_028709 BX901882.1 non-coding downstream 569769 18189406 ~ 18189520 (-)
XLOC_028730 dre-mir-129-1 non-coding upstream 271918 19047466 ~ 19047555 (-)
XLOC_028731 NA non-coding upstream 492837 19268385 ~ 19369785 (-)
XLOC_028733 NA non-coding upstream 758913 19534461 ~ 19539090 (-)
XLOC_028736 NA non-coding upstream 1124467 19900015 ~ 19901133 (-)
XLOC_028741 NA non-coding upstream 1269319 20044867 ~ 20047884 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_00701439_00712656 DEF6C coding CI01000020 null 701439 ~ 712825 (+)