G967959


Basic Information

Item Value
gene id G967959
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32477622 ~ 32480568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1102836
gccttgatgacagctttgcacactcttggcattctctcaaccagcttcacctggaatgcttttctaacagtcttgaaggagttcccacatgctgagcacttgttggctgcttttccttcactttgcggtccaactcatcccaaaccacctccattgggttgaggtcgggggattgtggaggccaggtcatctgatgcagcactccatcactctccttctttgtcatataacccttacacagcctggagttgtgttgggttattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccagatgggatggcgtatgacttgcagaatgctatggtagccatgctggttaagtgtaccttgaattctaaataaatcactgacagtgtaacCAGCGAAGCACCTTCACACCTtctctatgcttcacggtgggaaccacaaatgcggaGATCATCGGTTCACCTACtgtgtgtctcacaaagacatggtggttggaaccaaacatgtcaaatttggactcatcagaccgatggacagatttccaccgatctattggccattactcgtgtttcttggcccaaacaagtctcttcttattggtgtcctttagtagtggtttctttgcagaaatttgacctgaaggcctgattcacgcagtctcctctgaacagttgatgttgtgatgtgtctgttacttgaactctgaagcatttatttgggctgcaatttctgaggctgtaactctaatgaacttatcctctgcagcagaggttaatctgggtcttccattcctgtggtggtcctcatgagccagtttcatcatagcgcttgatggtttttgcgactgcacttgaagaaacttgaaaagttcttgacattttcttgacattttccagattgactgaccttcatgtcttaaagtgatggtggactgtcatttatcttatttgagctgtttttgccataatatcgacttggtcttttaccaaataagccTAACTTCTGTATACTACCCATGTCACAACACCGTTTGGCTCAAATTCATtaaggaaatacatttttttttaagtacttttaacaaggcacacctgttaatttaaatgcattctaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcaaggcaaagggtggctactttgaagaatctcaaatataaaatatatttggatttgtttaacacttttttggggttactacataattccatatgtgtaatttcatagttttgatgtcttcactattattctacaatgtagaaaatagtaaaaataaataaaaaccctggcatgagtaggtctgtccaaaacttttgactggttatgtatgtattttttaaaGACCACTTTCCAGGGGTTATACTTGCTTTTTCACAtgactgtgtatatataaataaaatacttatttacatatgGAGATTTTAGACAAATGTAGATTCATGTATTGAGAATGTAAAATTGAAATAGactggtaactgccaaaataaaggaaaaaaaatAAGGTGTTTTAATATGGCATTGGGCTACCATGAGATAGAACAGCTGGAGCTctgagggatgcgacaccattctcccacaagaaattccataatttggtacTTTGATATTTGTGGTGGAAACGCTGTCTCGAGCGCCGCTCcggaatctcccataagtgttcaattgggttgaaatCTTAGCCATATTCTATGAaaagcaagctagatctactcagtgTTTTCTAAAGCTTACcggcttcagttagcttcacattccagctcaggcttcatctGTACTATGACGGTGGATATTGCTCCTCTGCTTGCCTCTAACTCTCGCAGGCTTGTAACTGTGTATGCATGTCGTACATGGCTAGTCCAACgccaaactcttcattgagacaatgctgaaacatcaatccGTGGGCAAGTTATAATGCAATCTTTGCAAGAGGGAGGGTatctgatttcattggtcctcaactcacagctcagtcatttcattcagGGTAAGTGGAGTTAGCAGTGAGTTAGCCTGCGccggagcaggttagttctgaaggattcgttgccatataaatttacctggctaaaaggggAACCACTTTTGTATGTCCAGTTAGCCCGAGTTGACTAAAGTTATCTCTAACTCCTAAAATGTGCTTCGTAGGATACCCctctggtgactgagatggccatggcatatggtttacatcgttttcatgcacaTCGAGCCATtgagtgaccactcgtgccctgtggatgggggcattgtcatccacTGGCCGGGCAAAGCATTTTTATACATGGAATTTGTATTGCTTAATTCACcctggaaccacacctgtgtggaagcacctgctttcaatatactttgtatgcCTTTGTATTTACTTGAGTTTCCAtgattttggcagttaccttttatatatttttatgttgtCATATCACTATTACTCTAACATACTGTAACCCTGCGATTGAAACAGAACATGGAAGTTTAGGCTTATAAAAGCAGCCTATAATATATTATGTGCTTCACATCTTACCTTTGCATTTTAACATATGCAAAACTGTGAACCGAATGGTCCCAAAACCCAGTATGAAAAACTGTTAACCCACTGGTCCCACATTTCTGGTGACATGGGTCTCAATGTTCCATAGAGAAGGCCACATTCTTGCACTGATTTTAAGTGACTGCTGTGTCGAGACTCACACTTTGGGAGCCATTTTAATCGGGATTAAGTTGACCCCATATGACCAGGACAATGTGTTTTTTTAATGGTAAAATATCATGGTTGTCCCTGTTTTTAAACTGCTAGGGTGTTAGAAGGCAGGGGAACTCGCCACTGAATGTTCTACAGCTGCTCAAAAGTAATTTGACATCTTCCATTTTTGTTTTTTCAATAAAATAATTCAAAAA
>TU1102837
tttttggggttactacataattccatatgtgtaatttcatagttttgatgtcttcactattattctacaatgtagaaaatagtaaaaataaataaaaaccctggcatgagtaggtctgtccaaaacttttgactggttatgtatgtattttttaaaGACCACTTTCCAGGGGTTATACTTGCTTTTTCACAtgactgtgtatatataaataaaatacttatttacatatgGAGATTTTAGACAAATGTAGATTCATGTATTGAGAATGTAAAATTGAAATAGactggtaactgccaaaataaaggaaaaaaaatAAGGTGTTTTAATATGGCATTGGGCTACCATGAGATAGAACAGCTGGAGCTctgagggatgcgacaccattctcccacaagaaattccataatttggtacTTTGATATTTGTGGTGGAAACGCTGTCTCGAGCGCCGCTCcggaatctcccataagtgttcaattgggttgaaatCTTAGCCATATTCTATGAaaagcaagctagatctactcagtgTTTTCTAAAGCTTACcggcttcagttagcttcacattccagctcaggcttcatctGTACTATGACGGTGGATATTGCTCCTCTGCTTGCCTCTAACTCTCGCAGGCTTGTAACTGTGTATGCATGTCGTACATGGCTAGTCCAACgccaaactcttcattgagacaatgctgaaacatcaatccGTGGGCAAGTTATAATGCAATCTTTGCAAGAGGGAGGGTatctgatttcattggtcctcaactcacagctcagtcatttcattcagGGTAAGTGGAGTTAGCAGTGAGTTAGCCTGCGccggagcaggttagttctgaaggattcgttgccatataaatttacctggctaaaaggggAACCACTTTTGTATGTCCAGTTAGCCCGAGTTGACTAAAGTTATCTCTAACTCCTAAAATGTGCTTCGTAGGATACCCctctggtgactgagatggccatggcatatggtttacatcgttttcatgcacaTCGAGCCATtgagtgaccactcgtgccctgtggatgggggcattgtcatccacTGGCCGGGCAAAGCATTTTTATACATGGAATTTGTATTGCTTAATTCACcctggaaccacacctgtgtggaagcacctgctttcaatatactttgtatgcCTTTGTATTTACTTGAGTTTCCAtgattttggcagttaccttttatatatttttatgttgtCATATCACTATTACTCTAACATACTGTAACCCTGCGATTGAAACAGAACATGGAAGTTTAGGCTTATAAAAGCAGCCTATAATATATTATGTGCTTCACATCTTACCTTTGCATTTTAACATATGCAAAACTGTGAACCGAATGGTCCCAAAACCCAGTATGAAAAACTGTTAACCCACTGGTCCCACATTTCTGGTGACATGGGTCTCAATGTTCCATAGAGAAGGCCACATTCTTGCACTGATTTTAAGTGACTGCTGTGTCGAGACTCACACTTTGGGAGCCATTTTAATCGGGATTAAGTTGACCCCATATGACCAGGACAATGTGTTTTTTTAATGGTAAAATATCATGGTTGTCCCTGTTTTTAAACTGCTAGGGTGTTAGAAGGCAGGGGAACTCGCCACTGAATGTTCTACAGCTGCTCAAAAGTAATTTGACATCTTCCATTTTTGTTTTTTCAATAAAATAATTCAAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1102836 False 2947 lncRNA 0.41 1 32477622 32480568
TU1102837 True 1716 lncRNA 0.39 1 32478853 32480568

Neighbor

gene id symbol gene type direction distance location
LOC110535578 LOC106578586 coding upstream 1145 32462425 ~ 32476477 (+)
LOC110535577 LOC106578587 coding upstream 86817 32371461 ~ 32390805 (+)
LOC110535575 LOC105028291 coding upstream 122910 32350682 ~ 32354712 (+)
LOC110535570 LOC106578590 coding upstream 688272 31753869 ~ 31790306 (+)
LOC110535568 LOC106578592 coding upstream 1307639 31088864 ~ 31169983 (+)
ppp1r3g LOC106578584 coding downstream 2576 32483144 ~ 32485710 (+)
fars2 fars2 coding downstream 68921 32549489 ~ 32665562 (+)
LOC110535587 LOC106578620 coding downstream 357532 32838100 ~ 32859519 (+)
LOC110536598 LOC106578619 coding downstream 405219 32869194 ~ 32928578 (+)
LOC110535588 LOC106578617 coding downstream 448652 32929220 ~ 32945244 (+)
G967982 NA non-coding upstream 48120 32429293 ~ 32429502 (+)
G967981 NA non-coding upstream 48347 32428896 ~ 32429275 (+)
G967980 NA non-coding upstream 49863 32427445 ~ 32427759 (+)
G967976 NA non-coding upstream 58657 32418749 ~ 32418965 (+)
G967975 NA non-coding upstream 59542 32417655 ~ 32418080 (+)
G968129 NA non-coding downstream 186241 32666809 ~ 32667565 (+)
G968130 NA non-coding downstream 187098 32667666 ~ 32667918 (+)
G968152 NA non-coding downstream 230368 32710936 ~ 32711888 (+)
G968155 NA non-coding downstream 235073 32715641 ~ 32715992 (+)
G968158 NA non-coding downstream 239257 32719825 ~ 32720350 (+)
G965838 NA other upstream 1656370 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 4227710 28132122 ~ 28249912 (+)
G962100 NA other upstream 4248221 28227528 ~ 28229401 (+)
G961984 NA other upstream 4536047 27897166 ~ 27941575 (+)
G961864 NA other upstream 4648445 27828746 ~ 27829177 (+)
LOC110536614 LOC106578612 other downstream 903475 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 977793 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 1122479 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 1123945 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 1313807 33794375 ~ 33795061 (+)

Expression


Co-expression Network