XLOC_028728 (si:dkey-31f5.11)


Basic Information

Item Value
gene id XLOC_028728
gene name si:dkey-31f5.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18985529 ~ 19028861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055696
GTCGAGCGTTATGTTAAAGTTTAGTTAAAATCCAGAAGGAATGGTTGTTTGTTTTGCGTTTCCAACTACGGTTTCTTGTCGATCTTCGACTGAGCAGACATGAATGTGTGACTGCAGTAGGAGCATGCCCATTGCACTTCAACAGCAACTGTTTCTGAAATCATATACACATGAgtTGCCTAATTCTTTGACGACTGCCTGCTGTAGGGTGCTTGCACTCTGCTCTCTAACAATATGCTCAGCGAGGTGTGACCAGATATTGTGCATCTGAATCCTCCACTAGACTACTGATGCAGCCTAGAGAGCGAGGGGAGGAGAGAGAacaagtgagagagagagagagcaaagcggatctctctcccacacacacacacgcgcgcgcacagaCACAGATCTCGCTCTCCTGCAGTACAGTGCTGGTGGCTCTTCTGGAATTGTTTTCTTCTTCTCCTCGGGGAGAAAGGGTTATTTGCTGCCAAAGCCCGGCGCATCTGGTGGGCATTCCTCTGGAAGTCAGACACCATGTGAGCAGTGGCCCGTGACGACATTAGAGGGGCAGAATGCTGCTTCTGTACAGGACTCTTGTGGTGTTCTCTCTCTTCAGTTCAGTCAATGGATTTTTCGGTGGGAATGGGCCAAAACCAACAGCCCAAACCAAGGCAGACTCCAAAGGTTGGGGGCTGCCCTACTTGCCAAACTGGAAACCTCCATCACTTGGTTTGGGATCATTCAATTTTTTCAACAGGAATAGAGATTCTGCGGGAACAAAGGTGAGCTTGACCCTTCCAGAAGCAACTACACAAGACTATATTCTATCTTCAGAGGACTTAACCACCCTGAAATACCAGCCGACTGCAACCACAAATGAGGAGCTTCAAAGCAGCACTGTCCAGATAGGCACCCTGCTGCCTTTAAAATCAGCAAAACTGCCAACAGATCACTTACTCAGGAACAAACCACAATTACAAAGCTCTGACCCACCTCCTTCCATCCTCGATCATAGCTATGATCTTGATCTCTGGCCTCCCAATATTGGCCAAAGTACATCGAAAACACCACAAACAACATCTCCTCAGATTACTAGACCACAAACATACACTCTATCCACTGCTCAGAGTACCAGCATCACTCAGAATGGTACATTGAGTATGGTTACAGAAACCATGAACTCTTACACAGACCAAATCGAACCCACAGACACTCCATCAACAACATCAGAACTAACAGAGACTTCATTTCAAACCACACATTTCGTAACACCAGCAGACCCAAAGCCGGAAGTATCTACTGATCATCTGACCACTGTCAGCACTGGACAAAACACACTGGAGACAACAAATACAGCCTCAAAACCAGAATGGACAACCTTTGAGCCCACTGAGAAGACTCTGGATGGATTTACATGGGTAGAGCAGACCACAAGTCCAACAGAAATGGGAAAGTTTCGGGAAAGTTTCGGCACAGATTCCACTGCCGCCCTGCCAGCAGGAGGCTTTGCATGGGAGGAAGGCGATAAGGACACTGCGAAGAATGCTGATCTGACAACACAAAAGCGACACGATGAACTGACAACATCAGCTAGCTTCACGACTCTCAGGAACACAGAAATGCCCTCCACCGTGTCTGAAGACTGGCTGACAGACTTTACCCAAGAATCTGCACTCCCTGACTGCAACGCAGAACGGTCTGGAATTTGCAGTTCTAGTGACACTTGGCCCACCACTGTCCTGAGCAACAGCAGCAAAAATGACAGCACAACCACGGTCTCCACCAACCTCTCTCAGAGTCCTATACTGTTTCCAGCCCCACCTATGTTTGTGGCACTGTATTCAGATTGGAACAGTGCCCTGGCAACATGGGGTTCAGCGTGGGAAGCCCACATCTACGGCCTGGGCACAGTGTTCTGTCTAGTTGCTTTGGCCTCCACCCTGAACCTTCTGTGCCTGCCTCTACAGTACCCATCAGGCTGTGGCTACTTTGCTCTGGTCAGTTTTTGCCTAGTTGCAGCTGGCTCCACTAGGGCCTTTGCCCTAGTGTATGATGCATATGGATACCAAGACCGTATGTCATCCACAGAGGCCTCGTTGTTACTTTACGAGGCTCCATTCCCCTGTATGACTGCTGCCTTTGGCTTAGTGTTCCTTCTCCTATCAATGCGCTCCCGCATGCAGCTATCCTATTCCGTCTTTCAGAGACCTTGCATCCTGGCCGGCTTGGTGCTTCTGCACTTTGCTGCTGCCTTTGGCCCCGTTGCATTACTGCATGTTGACCAACGAGTCTACCTGTTTCTGTCCTTGATCTCTAGAGGTGCCTTTGTGGCTCTGGCAACCTTCCTATCAGCAGCATATTTTGTGTTCTACTGCTATGTTCGTGCTGACTCCAAGCATATTTATCATCTGAACAACACATCGCCAACACCAGCTGAACGCTACAACCGCTGCCCATTTGCAGAGAGCCGAGATTGGGACAGAGCTGCAGCTGCAGTGCTACTCTCTGCCATCTTCTCTCTGGCCTGTGCTGGTCTGCAACTCTACGCCATGCTACACGCTCTTGGCATGGCTGGAAGTGTTGAGTCCTTTCGCCCTTGGCCATGGTGGACTTTCCAGTTCAGCTGCAGAGTGTGTGAAGCAGTGGTTTGTCTCACACTGGTTCTGGTAGTTGCTCAACCAGTCTACTGTTCCGATCACCTTCCCCAGGCAGGTAGTTGCTGGACTGAACTTCTAGCAGCAAAGTCACCAATTATTCCTGGAAGCTATCAGTGGACTCTATCACATCAGGAGAAGCTTGCTATCTGTGATCCAATTGGGCATGGGGAGACAGAGTGCCTACCATTGTACACACTTGTGGATGACCGTCTAGGCAGCTTAAATGGTCTTGACCTTTTGTATCACAGCAACCGTGCACTGGCCTACCGTGACCTTGACCTGGATTTGCCCAACACTCATCCCAACACCGGTGCCCCTTCTATGGGTTCATCCTGTACAAGTGACTCTACAGCAGACCTGCGTCCTCCATCACCTATAAATCTGCGTCGAAGCATTGATGAGGCACTTTTTAGTGAGTCTCTATTTCCCATGAGCATCTTCAGCCCCTTACGACCCTTCACCTCAAGTGACCGCTCCCTGAATGGTAGAGAAACCATCTCAAGTGGTGCCCAAACAGCGAGAGGCACCCTTATTCCTGATCCAGGGTTATACCGAACATCATCATGTGTGGAGGTGCTACCGCAGGCTCCCATTCCCCCTCAAGCCCAAATGAATGGTCCGTCGTTGGGTTTTCCTCCATCCCCATCTCCCTCACTCTCATCTTCCACTTGCTGCTCATCTCCAGAGCGCTGGAGAGGCAGCTCCAGTTCCTCTTCCCTCTACAGACAGTCTCTGGGTGGTTCTTCTCTAGTTCTGTGCTCTACTCCAGAAGGACACCATCCTCCATCATCTACCCTCAGTGGAGGTTCCAGCCACACTGCCAGCTCTGGGCACCAACGAGACAACGTACAGAGACCCTACAGAACATTAAAGTCAGAGGACAGTCTGGACCAGCAGTCGGAGTTTGATCAGTCCGTCCAAGAAGAGTTTATCAGTGTGTGCAGACAGATAGATGCTCTTAGCATCTGCAGCGAGACTATTGACCTCTAGGGGAGTCCTCAACTTTCAGACAGAAGAATGATGTAATATGATAAAGCCAAAAGACTCGGGGTGCTTCTCAAATCATCACTAGGATTCCTACTCCAGTTCTTCTAAGGCTTAATTGGTAGAGTCCATCTAAGCATAGGACTTAGTACTAGAATGTCAACTCTTACTATATGGTCTTGTAAGTGCAAATGGCTGTCATACATTTATCCACCCTTGCAGTCACTGTGCACAAGTAATATTAAATCCTAATCTAAGGGCGAGTATCCACCAAATTGCTAAAAAAGCTCAGGTGTGAGTGCTACTTCGACTGCCTGGGTTCCTTTTacaacagcagaaaaaaatgctCAGCTGGAGAAAAATCTCTTCAGTAGACATTCACCCTACAGGTGAGGATACATGGTGCAACTTTTGAGCAATGTTGCTAGGCAAAGTGATTTTGCTTGGATACTTTCCTATGAGGAAAGGGCAAGAAATTTGTATCTGGGTCCAGTTGCACTAGTTAGTTGCCCTGTGTCACACTGGGTTGTCCATTGATGGCACCATTGGCGAAAGTTCCCCCATGTAACATGACCATAAAGATTACTtcatataaaaatctttatattcACCAGTTTTCAGTCAATGCAGTACAAGTAATGACAACTGTCTGTATTCTCTCAGTGGTTTACATAACACAAGCATTATGCGATGCATTTACAACATTGATTTTCATCTccaaatgttttttgttgtttttttgcattatatAATGGAATTTAATTAGCACAGTGCTCAGCTTATTTTCAGCTAAGTGTTTGTGAATTGAATGTGTGCAATAGATTAAGGGTAAACGAAGGATGCCATGAATAACACCAGATGTACCCTTCAAAATAGGACACGAAGCAAAGACTGCCTACTAAGCATCCTTCTAATTGAGATGTCCTTCAGCGAAGCTTGATGGCATGGCAGGGTAGATATGCAGCCTTACTAGGACACATCCTTCCGATTGAGAAGCACCCATGCAGTGATGTGATAAGCAGGAAAGGGGCAAATCAGGTGACTTGGTGAGTGTATTTACCAAGCTGTCAGATGTGTGTTGGACTAGAACTGTGCCAAATGTTTCAATTTCAGGATGTTTTTGGTATGTTCCTGTCAGGTAAGTTCTCCAAAGAGATGGATTCTGAAGTCAATATCCTTATAAAGGTTTATGAAGTGCCACCACTTGCCAGAAGCTTAGGCAGATTTTTGTACAAAAGTCCTTTGATTATTGATAAATTTGTAAGTGTAAAGCATTGCTTTCAAAATTTCTCTACACTACTAAGAGTGACGTTTGTATCAATTTGTACAAAATAGCTTTTTGGTCTATATGATTAATACTGTGAGAGTGCAAACTACTGATATCcatattgtaaaacaaatactacagaatCTAGCTTCAGAAAATGCTATCAATACTGTGTCTAATTTTGTAATCTGCATCATTTTAGAAACAGTCTTTGTGCTTCTAGTGTTTAGTCGCACAGGTAACTGCAAGTCACTGTTTATTCGTTTGTTTGCAATAATGCATTATGACGTCGAAGGGCCTAAAAAGTTTTATCAAATATGAGGGAGAAAACGTCTCTGTAGTTCAGTTGTTTTGTAGCACTTAACAAACTGAACTATAGAGCACAGACTGCCATTTTATCTTCCTCATAGTGTATATTTGATGACAATAATTTATCTGAAATACTCATTACACTGTTGCTCAATACATATTATGACTTTGTACATTTTATAGCGTGCATGAAAACTATGTGAGAAACAGCTGATACATCTAATGTTTGTTGTTTAAAGGCTGTTGGAGattttcaataaatattaaaaactga
>TCONS_00055697
TGCCACATGTAGGtttttatgcattcatttgtgtgtttttgagcatgtatttttttttctgtgtaggtTGCCTAATTCTTTGACGACTGCCTGCTGTAGGGTGCTTGCACTCTGCTCTCTAACAATATGCTCAGCGAGGTGTGACCAGATATTGTGCATCTGAATCCTCCACTAGACTACTGATGCAGCCTAGAGAGCGAGGGGAGGAGAGAGAacaagtgagagagagagagagcaaagcggatctctctcccacacacacacacgcgcgcgcacagaCACAGATCTCGCTCTCCTGCAGTACAGTGCTGGTGGCTCTTCTGGAATTGTTTTCTTCTTCTCCTCGGGGAGAAAGGGTTATTTGCTGCCAAAGCCCGGCGCATCTGGTGGGCATTCCTCTGGAAGTCAGACACCATGTGAGCAGTGGCCCGTGACGACATTAGAGGGGCAGAATGCTGCTTCTGTACAGGACTCTTGTGGTGTTCTCTCTCTTCAGTTCAGTCAATGGATTTTTCGGTGGGAATGGGCCAAAACCAACAGCCCAAACCAAGGCAGACTCCAAAGGTTGGGGGCTGCCCTACTTGCCAAACTGGAAACCTCCATCACTTGGTTTGGGATCATTCAATTTTTTCAACAGGAATAGAGATTCTGCGGGAACAAAGGTGAGCTTGACCCTTCCAGAAGCAACTACACAAGACTATATTCTATCTTCAGAGGACTTAACCACCCTGAAATACCAGCCGACTGCAACCACAAATGAGGAGCTTCAAAGCAGCACTGTCCAGATAGGCACCCTGCTGCCTTTAAAATCAGCAAAACTGCCAACAGATCACTTACTCAGGAACAAACCACAATTACAAAGCTCTGACCCACCTCCTTCCATCCTCGATCATAGCTATGATCTTGATCTCTGGCCTCCCAATATTGGCCAAAGTACATCGAAAACACCACAAACAACATCTCCTCAGATTACTAGACCACAAACATACACTCTATCCACTGCTCAGAGTACCAGCATCACTCAGAATGGTACATTGAGTATGGTTACAGAAACCATGAACTCTTACACAGACCAAATCGAACCCACAGACACTCCATCAACAACATCAGAACTAACAGAGACTTCATTTCAAACCACACATTTCGTAACACCAGCAGACCCAAAGCCGGAAGTATCTACTGATCATCTGACCACTGTCAGCACTGGACAAAACACACTGGAGACAACAAATACAGCCTCAAAACCAGAATGGACAACCTTTGAGCCCACTGAGAAGACTCTGGATGGATTTACATGGGTAGAGCAGACCACAAGTCCAACAGAAATGGGAAAGTTTCGGGAAAGTTTCGGCACAGATTCCACTGCCGCCCTGCCAGCAGGAGGCTTTGCATGGGAGGAAGGCGATAAGGACACTGCGAAGAATGCTGATCTGACAACACAAAAGCGACACGATGAACTGACAACATCAGCTAGCTTCACGACTCTCAGGAACACAGAAATGCCCTCCACCGTGTCTGAAGACTGGCTGACAGACTTTACCCAAGAATCTGCACTCCCTGACTGCAACGCAGAACGGTCTGGAATTTGCAGTTCTAGTGACACTTGGCCCACCACTGTCCTGAGCAACAGCAGCAAAAATGACAGCACAACCACGGTCTCCACCAACCTCTCTCAGAGTCCTATACTGTTTCCAGCCCCACCTATGTTTGTGGCACTGTATTCAGATTGGAACAGTGCCCTGGCAACATGGGGTTCAGCGTGGGAAGCCCACATCTACGGCCTGGGCACAGTGTTCTGTCTAGTTGCTTTGGCCTCCACCCTGAACCTTCTGTGCCTGCCTCTACAGTACCCATCAGGCTGTGGCTACTTTGCTCTGGTCAGTTTTTGCCTAGTTGCAGCTGGCTCCACTAGGGCCTTTGCCCTAGTGTATGATGCATATGGATACCAAGACCGTATGTCATCCACAGAGGCCTCGTTGTTACTTTACGAGGCTCCATTCCCCTGTATGACTGCTGCCTTTGGCTTAGTGTTCCTTCTCCTATCAATGCGCTCCCGCATGCAGCTATCCTATTCCGTCTTTCAGAGACCTTGCATCCTGGCCGGCTTGGTGCTTCTGCACTTTGCTGCTGCCTTTGGCCCCGTTGCATTACTGCATGTTGACCAACGAGTCTACCTGTTTCTGTCCTTGATCTCTAGAGGTGCCTTTGTGGCTCTGGCAACCTTCCTATCAGCAGCATATTTTGTGTTCTACTGCTATGTTCGTGCTGACTCCAAGCATATTTATCATCTGAACAACACATCGCCAACACCAGCTGAACGCTACAACCGCTGCCCATTTGCAGAGAGCCGAGATTGGGACAGAGCTGCAGCTGCAGTGCTACTCTCTGCCATCTTCTCTCTGGCCTGTGCTGGTCTGCAACTCTACGCCATGCTACACGCTCTTGGCATGGCTGGAAGTGTTGAGTCCTTTCGCCCTTGGCCATGGTGGACTTTCCAGTTCAGCTGCAGAGTGTGTGAAGCAGTGGTTTGTCTCACACTGGTTCTGGTAGTTGCTCAACCAGTCTACTGTTCCGATCACCTTCCCCAGGCAGGTAGTTGCTGGACTGAACTTCTAGCAGCAAAGTCACCAATTATTCCTGGAAGCTATCAGTGGACTCTATCACATCAGGAGAAGCTTGCTATCTGTGATCCAATTGGGCATGGGGAGACAGAGTGCCTACCATTGTACACACTTGTGGATGACCGTCTAGGCAGCTTAAATGGTCTTGACCTTTTGTATCACAGCAACCGTGCACTGGCCTACCGTGACCTTGACCTGGATTTGCCCAACACTCATCCCAACACCGGTGCCCCTTCTATGGGTTCATCCTGTACAAGTGACTCTACAGCAGACCTGCGTCCTCCATCACCTATAAATCTGCGTCGAAGCATTGATGAGGCACTTTTTAGTGAGTCTCTATTTCCCATGAGCATCTTCAGCCCCTTACGACCCTTCACCTCAAGTGACCGCTCCCTGAATGGTAGAGAAACCATCTCAAGTGGTGCCCAAACAGCGAGAGGCACCCTTATTCCTGATCCAGGGTTATACCGAACATCATCATGTGTGGAGGTGCTACCGCAGGCTCCCATTCCCCCTCAAGCCCAAATGAATGGTCCGTCGTTGGGTTTTCCTCCATCCCCATCTCCCTCACTCTCATCTTCCACTTGCTGCTCATCTCCAGAGCGCTGGAGAGGCAGCTCCAGTTCCTCTTCCCTCTACAGACAGTCTCTGGGTGGTTCTTCTCTAGTTCTGTGCTCTACTCCAGAAGGACACCATCCTCCATCATCTACCCTCAGTGGAGGTTCCAGCCACACTGCCAGCTCTGGGCACCAACGAGACAACGTACAGAGACCCTACAGAACATTAAAGTCAGAGGACAGTCTGGACCAGCAGTCGGAGTTTGATCAGTCCGTCCAAGAAGAGTTTATCAGTGTGTGCAGACAGATAGATGCTCTTAGCATCTGCAGCGAGACTATTGACCTCTAG

Function

symbol description
si:dkey-31f5.11 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRRT4 (proline rich transmembrane protein 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7826 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PRRT4 (proline rich transmembrane protein 4).

Ensembl:

ensembl_id ENSDARG00000099812

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055696 False 5479 mRNA 0.46 6 18985529 19028861
TCONS_00055697 True 3527 mRNA 0.50 4 18987373 19016396

Neighbor

gene id symbol gene type direction distance location
XLOC_028727 si:dkey-31f5.8 coding downstream 20365 18952482 ~ 18965164 (-)
XLOC_028726 rap1b coding downstream 46191 18852821 ~ 18939338 (-)
XLOC_028725 cbll1 coding downstream 134164 18836791 ~ 18851365 (-)
XLOC_028724 def6c coding downstream 209981 18759289 ~ 18775548 (-)
XLOC_028723 atxn10 coding downstream 243423 18720785 ~ 18742106 (-)
XLOC_028729 lepb coding upstream 2907 19031768 ~ 19033805 (-)
XLOC_028730 dre-mir-129-1 coding upstream 18605 19047466 ~ 19047555 (-)
XLOC_028731 NA coding upstream 239524 19268385 ~ 19369785 (-)
XLOC_028732 snd1 coding upstream 368084 19396945 ~ 19694108 (-)
XLOC_028733 NA coding upstream 505600 19534461 ~ 19539090 (-)
XLOC_028722 NA non-coding downstream 270603 18712763 ~ 18714926 (-)
XLOC_028721 NA non-coding downstream 305837 18654682 ~ 18679692 (-)
XLOC_028720 dre-let-7a-3 non-coding downstream 331268 18654155 ~ 18654261 (-)
XLOC_028719 dre-let-7b non-coding downstream 332288 18653148 ~ 18653241 (-)
XLOC_028709 BX901882.1 non-coding downstream 796009 18189406 ~ 18189520 (-)
XLOC_028736 NA non-coding upstream 871154 19900015 ~ 19901133 (-)
XLOC_028741 NA non-coding upstream 1016006 20044867 ~ 20047884 (-)

Expression


Co-expression Network