G969440


Basic Information

Item Value
gene id G969440
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 33591200 ~ 33594127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1104403
AATTGGTATGTAATGGAAATATGGAGCCTACGTTAAAAAGTACCTCATCTTACTGATACACCTAGATCCCAAGGTTCATTGCGCAACGGGCAATTGTTAAAGGATTTGGTAAAACACAGCACAGGGAGGGGAGTCAACGCATGAAACAATACCAGGGGGATAAAAACTAAACAATTACCTTGAGAAAAATATTAGATCACAATGAATGACAGCTTGCATCAGAACTGAGCTTCATCGTAAAGCACAAGACACATAGACATTAGACACACAGACAAAGTTGTGGGCTGGAGAAGTTAAATCGGCTTCACATACCCATATCTTCATGGTATATATATAggccatattttatttatttccccttaaaaaaaagtattcaaaTATCTACGAACAGAAACGGGGTCCAGGGTCTCTTCAGTTTTGGTTCAACACACAAACGAAACACTAGTAGAATAATTCAAGTCTGGACACAtcaggttttttttttatatagatatatatatataaaaagtgaACTTGATACAACAAAGCACATAACGAGAACTCAAAACAGCGATAAACATTCGGTGAAAGTTCTACTTGTTTGGTGTTATGTACATTACTAATACACTGATAATGGTTGCCCCCACACCTTTCCGAAGCAGAAAATGTATTGCTCTGAACGACTTGAACGAAAACATACAAAATAACGCAATTACACTGCGACTGTTCTATTCTCTTTTCTTATTACTCGAGGTTTGCCACTTTCGGAAGCAAGGAAATGTCAACAATATTTTCTAAATAAAAACTTCACTACACCTGGAGTAACTACAACACTGGAGTATGTATACGTCATCTTCAGAAGTAAATTGGACTTTGTTGCACCAGATACCAGGTTTCCGTAAACCTGAAATGGATCAATACCAAATCAAATTAACTACTGAAGGAAGGGAACATCCTCATGACATCaaa
>TU1104402
tatataaaaagtgaACTTGATACAACAAAGCACATAACGAGAACTCAAAACAGCGATAAACATTCGGTGAAAGTTCTACTTGTTTGGTGTTATGTACATTACTAATACACTGATAATGGTTGCCCCCACACCTTTCCGAAGCAGAAAATGTATTGCTCTGAACGACTTGAACGAAAACATACAAAATAACGCAATTACACTGCGACTGTTCTATTCTCTTTTCTTATTACTCGAGGTTTGCCACTTTCGGAAGCAAGGAAATGTCAACAATATTTTCTAAATAAAAACTTCACTACACCTGGAGTAACTACAACACTGGAGTATGTATACGTCATCTTCAGAAGTAAATTGGACTTTGTTGCACCAGATACCAGGTTTCCGTAAACCTGAAATGGATCAATACCAAATCAAATTAACTACTGAAGGAAGGGAACATCCTCATGACATCaaaagacctgtgtgtgtgtgcgttatgtatgcatgcatgtatgtgttCATTAATCTAGATAATCACTCAGCATAGAAAGAGTTTGTAAATCAATTTTGTTCtggaaagtaaaaaaaaaaaaaaaaaaaaaaaaaactcaaacgTCCTCTTTCCTTTTGCGGCTTGGTGTTCTTATCAGAATGCTAAACTACAATGAGATTGTCAAGACTGCTATGACATTTTTAATTCtggccaaacacaaaaacaacaaaccagTATCCTTGTTTTACGATTAAATCAAAAGTAAAGTTTACTATTAAATTAAAGCTCTATATGAATATCAGCTAGTCAGAAAGTCATgcaaaccagaccaaaccaggctTCCAACTGTTCCTAAATGAGCCATATCAATAGTTTTcagaatataaatcagccaacaACATTCATTGTATCAGTGATCCAACACAGATAAATATGAATTTATAGCAACTCAAACAAATCTGCTACAATGTCAAAATGTACCCTGCAAAAATCGGGAAGCTTCATAAGGTCTTTATTTTTCCAATCAATCTGTGAAAGATATTGTTGACATAGTTTTATAGCCTACCGGCCATACTCAGCATTTCAATCATTATCCCAAAGGACCATTATCCCAATCAAAAATCTTTAAAACAGAACTTGTAACGATAATTTATTCTGGAGCACACCCACTAAACCTGACATGTACCAATGAAATCAGAATatgctaaaaaaaatatatatacaaaactaAAGTTGAGTGCATCAgaaaagtaaaataatgtctaAAACCCATTTCGAGATCGCACCAATGTAGGCGGGCCTATTCGTGTTTAACCAATTAAAAGACTAAATAAAAATCTCAATGATCAAGTAACGTTACCGGCCAAAATGGACTCTTCAGAGTGAGAAGGAAAATGAAACCAGTCTTTACCAGTGAATGTCATTTAACTTTAAAGTACAGAAGAAAACCTAAAGTATAGACACTATTATCCACGTTATCCAGTCTTAATGTTAGGAACAAGATCTTACTATATTTTGTACGGCCAGTCAATCTAGATTCTATTCGAACAACCTTGGAACCATTACCTGGTGCATGTGTACGTTTGAATCATCCCCATCATCATACCCTCAAACTGCATTTGACCAGAATTTCTATTAATGGCTTTAACACGTTCCTACATGTTCTCCACTAGGCAGTGCCATTTACCCAGAAACTAAACGCCGCTTGAGGAAGGGGCCTAAAAGCCACCCCATAGTGTACACAATCATTatcaaatgctgccatctatagGAGGAAAATGGCACTGCCAGAAGGAAAATGATGTCGTGGCAAGCCTCGCTCCTCTTCTACACCTGCTTTATTCAAGTAGCTTTCTTCGAATCCAAAACACCTGTTCAGAAAATGAGCAAAATCTTGAGGTACAGCGTAAAACAATAGCCTATACACAGGCAGATCTCCAAAACTCTTCTCTCAAACTGGTGATATCGATGGTGTTCACAACTGAGCCGAGGATGGGAGCAACCATTATCCAGTGTCAACCACTACCTCTTGTTGTCGTTAGTGCCCGATGCACAAACCTTTTACTCAAACCTTTTCTCATATCTCACATTTCTTCTGTCACAGTTTGAACGTCACCAGCTCGGCGACCATGAACATATTGTCACATGAAACGGGCATTGAACCTCCCCCCCTTGACAGCAATTCAACtatgagaagaaaaaaacatgctGCTTTGTGCTGAGGATTTCCACAGTAGACAGTCTGCAGGCGAGGCGGTTGGGGGTGCTTGTTGTGAGGAGGATGAGGGTACGGTGTAGGTTAGTGTTCCATAGGGACGTGGTTACATCGAGCTGAAGGAGCTGTACACGGGGGCCTCATGGTTGAATAAGCATCTGACTCGACGTCCCCGCACTGGGCGCTCGCCGCCTCCCTCTACCGCTCACTTCAGCCGTCAATCAGTGACACGTCAATGTGCGACAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1104403 False 948 lncRNA 0.37 1 33591200 33592147
TU1104402 True 2431 lncRNA 0.39 1 33591697 33594127

Neighbor

gene id symbol gene type direction distance location
shh LOC106578610 coding upstream 9127 33573702 ~ 33582073 (+)
LOC110535592 lmbr1 coding upstream 117310 33411705 ~ 33473890 (+)
LOC110536614 LOC106578612 coding upstream 204825 33383589 ~ 33386375 (+)
LOC110535589 LOC106578615 coding upstream 356657 32945768 ~ 33234543 (+)
LOC110535588 LOC106578617 coding upstream 645956 32929220 ~ 32945244 (+)
LOC110535596 NA coding downstream 50706 33644833 ~ 33690571 (+)
LOC110535601 LOC106590111 coding downstream 314589 33908713 ~ 34154878 (+)
LOC110535603 LOC106578637 coding downstream 581375 34175502 ~ 34177730 (+)
LOC110535604 LOC106578639 coding downstream 589712 34183839 ~ 34427557 (+)
LOC110535606 LOC106578642 coding downstream 833931 34428058 ~ 34430799 (+)
G969445 NA non-coding upstream 7526 33583465 ~ 33583674 (+)
G969444 NA non-coding upstream 7761 33583167 ~ 33583439 (+)
G969416 NA non-coding upstream 52789 33538197 ~ 33538411 (+)
G969415 NA non-coding upstream 53391 33537583 ~ 33537809 (+)
G969348 NA non-coding upstream 103639 33487283 ~ 33487561 (+)
G969441 NA non-coding downstream 420 33594547 ~ 33594805 (+)
G969449 NA non-coding downstream 2569 33596696 ~ 33596911 (+)
G969452 NA non-coding downstream 4976 33599103 ~ 33599303 (+)
G969454 NA non-coding downstream 6534 33600661 ~ 33600898 (+)
G969457 NA non-coding downstream 10934 33605061 ~ 33619499 (+)
G965838 NA other upstream 2769948 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 5341288 28132122 ~ 28249912 (+)
G969455 LOC106578609 other downstream 8920 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 10386 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 200248 33794375 ~ 33795061 (+)
G970054 LOC106578636 other downstream 569689 34163816 ~ 34170987 (+)
G970283 NA other downstream 585576 34179703 ~ 34180048 (+)

Expression


Co-expression Network