XLOC_002873 (rabgef1)


Basic Information

Item Value
gene id XLOC_002873
gene name rabgef1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32854901 ~ 32880298 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005316
ACACAAAGGATACAATGAGTCAGCGCTCGGAGAGACGGGGGATCCATGTGGACCAATCAGAACTGCTGTGTAAGAAAGGCTGTGGTTATTATGGCAATGCTGCCTGGCAGGGCCTGTGCTCCAAGTGCTGGAGGGACGAATATCAGAAAGCTCGGCAGAGGCAGATCCAGGATGACTGGGCTCTGGCAGAGAAGCTGCAGCGAGAAGAGGAGGCCGCTTATGTCAGCAGTCATAGTTCCTCACAGACCCAGCCTCCGCAGTCCCACTCCCAGCACTCTCTCGCCACCTTCTCCAAATTCGAGGAGAAGAAAACCAACGAGAAAACCCGAAAGGTCACCACTGTAAAGAAGTTCTTCAGCCCCTCCTCACGTACAGCCCCCAAAAAAGAGAGCCATGAGGCAAAAACGCCCAGTCCGTCCATCACCCGTCAGTCCAGCATCGAGACCGATCGCGTGTCACGAGACTTTGTGGAGTTCCTCAAGACCTTGCATAAGCCTGGCAGAGAGATCCACAAACACAGTCGTGCATTTATTGACAGCATGGGGAATAAAAAGCAGGATCTCAGCGCTGAAGAACTGTCTGAATGTGTGCAAGACTTCTATCAGGGCATGTCTGACCGACTCTTGAATCATTTTAAAGGCTCCTCTGAGAAAGTGGACAGGGTGATGGATCAAGTGGAAAAATACATCATGACTCGACTCTACAAGAGCGTCTTCTGTCCAGAAACCTCAGATGATGAGAAAAAAGACCTGGCCACGCAGCACAGGATTAGAGCCTTACACTGGGTAACCATTCAGATGTTGTGTGTTCCTGTGGAAGAGGAGATTCCAGAAGTCTCTGATAGTGTAGTCAAAGCCATCACCGATATCATTGAGATGGACTCCAAGCGTGTGCCCCGGGATAAACTGGCGTGCATCACCAGTTGCAGCAAGCATATCTTTAATGCCATCAGGGTCACTAAGAACGAGCCAGCTTCTGCAGATGACTTCCTGCCCACCCTCATCTATATCGTACTGAAGGCAAACCCGCCACGACTGCAGTCCAACATCCAGTACATCACACGCTTCTGCAACCCCTCAAGACTCATGACAGGAGAGGATGGATATTACTTCACCAACCTGTGCTGTGCCGTTGCCTTCATAGAGAAGCTGGACGCCCAGTCATTAAATCTCAGCCCTGAGGATTTTGAGCGCTACATGTCAGGCCAGGCTTCTCCTCGAAGGCAAGACGATCCGGCAGGCTGGCCCCAAAGTGGCTCTCGTGTAAATCCAGTGCTCACTCAGATCCAACACAACCTCAGTGTCCTGTCCAGCCTGGAGAAAAGACAGCAGCAGGTCATCGAGGGGGCGCAGAGCCTGGAGGCGGAGCTGACCGAATGGCAGGAGAGCGTGGCCCGCGAGGTGCAGGAGATCCTGGAGCGATACCCGCTGGACATCAAACCACGCGCATCAGCGATCGATGCCGAAAACGTGGAGAACGACAGGCTGCCACCTCCACTTCAGCCACAAGTCTTTGCAGGTTAGCGTAGCATCATGTTCTGAGACGGGAAAAGCATGTTTCAAAACGCAACGGCTGCTCTCGAAACAAAATCTCCGCACTTACCATTCCATCTGCTTTATTTTAATGCTTATACAGTCGGCTGTTACGTATTTTATGCAAATGTATTCTTGTCACATTTGTGCAGCTGATCAAAAAAGGGCGAGAGTTCGGGAAGCTATAAAATATTTCTAGTCTAACTTTGATTTGATCTACCATTTTAAATCTTCAAGATAGCTGCTAATACGTcctcttaaatggatagttctcACCAAATTGAGATGTCGCTGTTCATTTAGTAATTCTCAGGCCATTTAAGATGTACAAAAGTTGAAAATTAAAGATTTGTTTGGTGAAACTGGGGTATTTGTGGATTCAGAAAATGCAAAGCAATGGTGAttagcactttgagagtcaaaacaaATACAGACACTAAAAGTAATAATGCAATTgaacaggtgtcaaagccagttcctggagggccaccgttctgcacagtttagtttcaatcctaattaaacacatctgatcaaactaattgagtccttcaggcatATTTGAAACCCACATGTAAGTgtattgaagcagggttggaagtAAACTGCAGAGCTGCCGCCCTCCAGgatctgagtttgacacctgtggcttagTGTATTGTCAGAATCTGCAGTTCTTTTGCCTGtatattacttttatttgtttgacTCTCAAAGCTGTAGActtgcattttcttttttaatcatcATAGTTTcagataaaaaatatttgaaatctgatctaataaataaaaaggtagcATCTTTTACAGCCTGAGGGGGAGTGAACATACAGCAAATTGGGTTGAACTATCTTTAAATATgattacagttttatttatgtGATCATAACACCACATATCAGCATCTCTAATGCACATTAGTCCTGTTCACTGTAGGGTGTTTCACCTTCCATGCCTTGTTGTGTGGGATGTTTGGGTAAAGGAGTGTTCGTATATGTATGTGTAAAATGTTTTGCTGCTTCTACTGTgtacttaaaaaatttaaatttaaacatcatCCAATTTTTGTGCTTTTAAGGGAATTAAAAGTCTCGGTACGCTCATTCTTAAACACTTGGTCCCCTAATTCAGTGTTTcacaaccacgttcctgaaggaccaccaacactgcatgttttggatgtctcctttgtcacatccagtacaggtctttcagtctctgctgatgatctggatcaggtgtgtttggtgaaggagacatggaaaatgtgctggtggtcctccaggaacatggttgagaaacacttacATGATTGGGGGAATGCAGAAGTTTTAGCAACAAACACTATATTTACAAAGACATTTCTTTATTTGCGGATGAAAATGTAGGTGGATTTGCTCGGTTAAATTCATCTAGTGATTTTGTTGTACATAGTCCTTCTTCCTGAAGATGCAAATgactttgttttgctttttgatgTTTTTAGCGTTACATAAAACAAACTCAAAATGTGATTCAGCTTATTTTGAATACTGTCCCAGCTGTAATTGTAACAGGTACTTGGCAAAACACTATATTCATGTGGAAAATAATGGCTTTCACTCACAGTAATGATAAtgattgatgtctgtgtgtgatATTTTAACTGAACTGcattatttataatgtaaataaaaattgaGGTGTGTCATTTTGCTCTCTGTGCATTATTATAGGAtgcacttactggccactttgttaggtacatctgtccaactgcttcttaatgcaaatttctaatcaggcaatcacatggcagcaactcaatgcatttaggcatgtagacatggtcatgatgatctgctgcagttcaaatcaagcatcagaatggggaagaaagtgaatttaagtgactttgaagttGGCATGGTTgattggctggtctgagtatttcagaaactgctgatcgacTGGGATGTTAGGCACAgccatctctagtgtttacagagaatggtcagataAAGAGAAATTATCCAGTCAATTATccttctgtgggcacaaatgccttgttgatgccagaggtcagaggagaatggcctgactggtttgagctgatagaaaggcaacagtaagtcaAATGACCACTCTTTACAACagaggtatacagaagagcatctctgacaTGTCAccatgtccaaccttgagacggatgggctacagcagcagaagaccacaccgggtgccgctcctgtcagctgagaacaggaaactgaggctacagtttgcagaggctcaccaaaattggacaatgaaGATTGGAAAACACTGTCTGGTCTGACAAGTCTCGATTTCTACTGCGGCATTTGAATGGTAGCGACAGAATTTAGCACCAACAACTTAGCATGGTTCcctcctgtcttgtatcaactgttcaggctgtgggtggtggtgtaatggtgtgggggatattttcttgataacctttgggcccattagtactagttgagcattgtgtcaacctgagtgttgttgctgaccatgtccatcccttaatgaccacagcgtacccatcttctgatggctaatttCAGCTGGATAACACACCATATCaaaaagcacgaatcatctcagactggtttcttgaacatgagttcactgtactcaaatggcctccacagtcgccagatctcaatccaatagagcacttttggggtgtggtggaacgggagattcgcatcatggatgtgcagccaacaaatctgcagcaactgcgtgatgctatcatggaccaaaatctctgaggatatttccagtagcttgttgaatctatgccacaaaggattaaggcagttctgaaggcaaaagggggtccaacctggtactcgtaaggtgtaccttataaagtggccattgagtgtaaATTGCTCTGTAACACCAAAATATATCAGGAAAGCACAATGCTGACATCTGATGGTAGACTCAATTTACTCAGTGTATGAAAGTCACCATGTTTTAAACTTACAAACAAAAGAACAGGTTTTGGAGGAAGCGTCTTGGTTGTTTTGTAAATCGCAACTAATGTTTGGAACAATGAAGattatattatttctgaaaatgaaATCAAGTGCTCGCGAATTGCTCCACAGTGTACGAAAGGTGAGGATATATGGAAAAATGCAGATCTGTCAGTCGGATAACTTCAATATCTTTTTAAAATGAGTAGAATTGAGTCGCATTGGGTATAGCCTGAATGTAACTGTTTAATTTGCACAGATGCTCATCAGGGACTTTGAAAATGGCTCATTTGATGAAGCATCAGATCCATAACAGATTTGCAGCCCCACCAAACCTGAGTCTCGTACGATGGTTCGGCTGCACCTGCAGGCCTCCAGAGGCTCCCAGTATAGAATATAGGTCAATGTTTCTCAGGAGACTTACACACTCCATTGGAGATCTTGATTTACTGTGCATACTCTACATTTGGCTCTACATTATTCAGGTAATGTGTGACTTCGATGTTTGTTAGGCTATTTTAGACGTATGATTGCTGATGTATTAGTGATTATTGATGGAAGTAATCGTGGTTGATGATAAAAGTGCTGTATTTATGCGCATAACCATATATTAAATCTTCCAATCCGAAAACGTcaaaggcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggtttcttGT
>TCONS_00005317
CACCAGTCGCCTGGATATGACGTCGTTGTGACCCGGAGAAGAGACCGCTGACGAGACACAAAGGATACAATGAGTCAGCGCTCGGAGAGACGGGGGATCCATGTGGACCAATCAGAACTGCTGTGTAAGAAAGGCTGTGGTTATTATGGCAATGCTGCCTGGCAGGGCCTGTGCTCCAAGTGCTGGAGGGACGAATATCAGAAAGCTCGGCAGAGGCAGATCCAGGATGACTGGGCTCTGGCAGAGAAGCTGCAGCGAGAAGAGGAGGCCGCTTATGTCAGCAGTCATAGTTCCTCACAGACCCAGCCTCCGCAGTCCCACTCCCAGCACTCTCTCGCCACCTTCTCCAAATTCGAGGAGAAGAAAACCAACGAGAAAACCCGAAAGGTCACCACTGTAAAGAAGTTCTTCAGCCCCTCCTCACGTACAGCCCCCAAAAAAGAGAGCCATGAGGCAAAAACGCCCAGTCCGTCCATCACCCGTCAGTCCAGCATCGAGACCGATCGCGTGTCACGAGACTTTGTGGAGTTCCTCAAGACCTTGCATAAGCCTGGCAGAGAGATCCACAAACACAGTCGTGCATTTATTGACAGCATGGGGAATAAAAAGCAGGATCTCAGCGCTGAAGAACTGTCTGAATGTGTGCAAGACTTCTATCAGGGCATGTCTGACCGACTCTTGAATCATTTTAAAGGCTCCTCTGAGAAAGTGGACAGGGTGATGGATCAAGTGGAAAAATACATCATGACTCGACTCTACAAGAGCGTCTTCTGTCCAGAAACCTCAGATGATGAGAAAAAAGACCTGGCCACGCAGCACAGGATTAGAGCCTTACACTGGGTAACCATTCAGATGTTGTGTGTTCCTGTGGAAGAGGAGATTCCAGAAGTCTCTGATAGTGTAGTCAAAGCCATCACCGATATCATTGAGATGGACTCCAAGCGTGTGCCCCGGGATAAACTGGCGTGCATCACCAGTTGCAGCAAGCATATCTTTAATGCCATCAGGGTCACTAAGAACGAGCCAGCTTCTGCAGATGACTTCCTGCCCACCCTCATCTATATCGTACTGAAGGCAAACCCGCCACGACTGCAGTCCAACATCCAGTACATCACACGCTTCTGCAACCCCTCAAGACTCATGACAGGAGAGGATGGATATTACTTCACCAACCTGTGCTGTGCCGTTGCCTTCATAGAGAAGCTGGACGCCCAGTCATTAAATCTCAGCCCTGAGGATTTTGAGCGCTACATGTCAGGCCAGGCTTCTCCTCGAAGGCAAGACGATCCGGCAGGCTGGCCCCAAAGTGGCTCTCGTGTAAATCCAGTGCTCACTCAGATCCAACACAACCTCAGTGTCCTGTCCAGCCTGGAGAAAAGACAGCAGCAGGTCATCGAGGGGGCGCAGAGCCTGGAGGCGGAGCTGACCGAATGGCAGGAGAGCGTGGCCCGCGAGGTGCAGGAGATCCTGGAGCGATACCCGCTGGACATCAAACCACGCGCATCAGCGATCGATGCCGAAAACGTGGAGAACGACAGGCTGCCACCTCCACTTCAGCCACAAGTCTTTGCAGGTTAGCGTAGCATCATGTTCTGAGACGGGAAAAGCATGTTTCAAAACGCAACGGCTGCTCTCGAAACAAAATCTCCGCACTTACCATTCCATCTGCTTTATTTTAATGCTTATACAGTCGGCTGTTACGTATTTTATGCAAATGTATTCTTGTCACATTTGTGCAGCTGATCAAAAAAGGGCGAGAGTTCGGGAAGCTATAAAATATTTCTAGTCTAACTTTGATTTGATCTACCATTTTAAATCTTCAAGATAGCTGCTAATACGTcctcttaaatggatagttctcACCAAATTGAGATGTCGCTGTTCATTTAGTAATTCTCAGGCCATTTAAGATGTACAAAAGTTGAAAATTAAAGATTTGTTTGGTGAAACTGGGGTATTTGTGGATTCAGAAAATGCAAAGCAATGGTGAttagcactttgagagtcaaaacaaATACAGACACTAAAAGTAATAATGCAATTgaacaggtgtcaaagccagttcctggagggccaccgttctgcacagtttagtttcaatcctaattaaacacatctgatcaaactaattgagtccttcaggcatATTTGAAACCCACATGTAAGTgtattgaagcagggttggaagtAAACTGCAGAGCTGCCGCCCTCCAGgatctgagtttgacacctgtggcttagTGTATTGTCAGAATCTGCAGTTCTTTTGCCTGtatattacttttatttgtttgacTCTCAAAGCTGTAGActtgcattttcttttttaatcatcATAGTTTcagataaaaaatatttgaaatctgatctaataaataaaaaggtagcATCTTTTACAGCCTGAGGGGGAGTGAACATACAGCAAATTGGGTTGAACTATCTTTAAATATgattacagttttatttatgtGATCATAACACCACATATCAGCATCTCTAATGCACATTAGTCCTGTTCACTGTAGGGTGTTTCACCTTCCATGCCTTGTTGTGTGGGATGTTTGGGTAAAGGAGTGTTCGTATATGTATGTGTAAAATGTTTTGCTGCTTCTACTGTgtacttaaaaaatttaaatttaaacatcatCCAATTTTTGTGCTTTTAAGGGAATTAAAAGTCTCGGTACGCTCATTCTTAAACACTTGGTCCCCTAATTCAGTGTTTcacaaccacgttcctgaaggaccaccaacactgcatgttttggatgtctcctttgtcacatccagtacaggtctttcagtctctgctgatgatctggatcaggtgtgtttggtgaaggagacatggaaaatgtgctggtggtcctccaggaacatggttgagaaacacttacATGATTGGGGGAATGCAGAAGTTTTAGCAACAAACACTATATTTACAAAGACATTTCTTTATTTGCGGATGAAAATGTAGGTGGATTTGCTCGGTTAAATTCATCTAGTGATTTTGTTGTACATAGTCCTTCTTCCTGAAGATGCAAATgactttgttttgctttttgatgTTTTTAGCGTTACATAAAACAAACTCAAAATGTGATTCAGCTTATTTTGAATACTGTCCCAGCTGTAATTGTAACAGGTACTTGGCAAAACACTATATTCATGTGGAAAATAATGGCTTTCACTCACAGTAATGATAAtgattgatgtctgtgtgtgatATTTTAACTGAACTGcattatttataatgtaaataaaaattgaGGTGTGTCA
>TCONS_00005318
AGACACAAAGGATACAATGAGTCAGCGCTCGGAGAGACGGGGGATCCATGTGGACCAATCAGAACTGCTGTGTAAGAAAGGCTGTGGTTATTATGGCAATGCTGCCTGGCAGGGCCTGTGCTCCAAGTGCTGGAGGGACGAATATCAGAAAGCTCGGCAGAGGCAGATCCAGGATGACTGGGCTCTGGCAGAGAAGCTGCAGCGAGAAGAGGAGGCCGCTTATGTCAGCAGTCATAGTTCCTCACAGACCCAGCCTCCGCAGTCCCACTCCCAGCACTCTCTCGCCACCTTCTCCAAATTCGAGGAGAAGAAAACCAACGAGAAAACCCGAAAGGTCACCACTGTAAAGAAGTTCTTCAGCCCCTCCTCACGTACAGCCCCCAAAAAAGTCCCCCccgaaaaagaaagagagaaagagaaagaggagaAGTTGCCAGGCAGGAGAGAGAGCCATGGAGAAAACCTCCTGAGGGATCTGAAGGGCATTTTTACCCAACCCTGGGAAATGAGCTCCCCCACTGAAGAGAGCCATGAGGCAAAAACGCCCAGTCCGTCCATCACCCGTCAGTCCAGCATCGAGACCGATCGCGTGTCACGAGACTTTGTGGAGTTCCTCAAGACCTTGCATAAGCCT

Function

symbol description
rabgef1 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1486 Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human RABGEF1 (RAB guanine nucleotide exchange factor 1).

Ensembl:

ensembl_id ENSDARG00000014430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005316 False 5252 mRNA 0.43 8 32854901 32877348
TCONS_00005317 False 3279 mRNA 0.44 9 32856929 32880298
TCONS_00005318 True 634 mRNA 0.54 4 32866450 32877350

Neighbor

gene id symbol gene type direction distance location
XLOC_002872 trim37 coding downstream 3054 32809620 ~ 32851847 (-)
XLOC_002871 NA coding downstream 74611 32779880 ~ 32780290 (-)
XLOC_002870 NA coding downstream 176656 32676810 ~ 32678245 (-)
XLOC_002869 atg101 coding downstream 191142 32657496 ~ 32663759 (-)
XLOC_002868 umodl1 coding downstream 214960 32613706 ~ 32639941 (-)
XLOC_002874 kctd7 coding upstream 1288 32881586 ~ 32890617 (-)
XLOC_002875 NA coding upstream 14699 32894997 ~ 32896944 (-)
XLOC_002876 cux1a coding upstream 18235 32898533 ~ 33156789 (-)
XLOC_002877 NA coding upstream 278291 33158589 ~ 33164573 (-)
XLOC_002878 bcl7ba coding upstream 360112 33240410 ~ 33251876 (-)
XLOC_002867 NA non-coding downstream 263439 32584685 ~ 32591462 (-)
XLOC_002863 NA non-coding downstream 604055 32216413 ~ 32250846 (-)
XLOC_002862 NA non-coding downstream 770277 32077811 ~ 32084624 (-)
XLOC_002883 dre-mir-454a non-coding upstream 496520 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a non-coding upstream 496703 33377001 ~ 33377086 (-)
XLOC_002885 dre-mir-130a non-coding upstream 496832 33377130 ~ 33377214 (-)

Expression


Co-expression Network