XLOC_028730 (dre-mir-129-1)


Basic Information

Item Value
gene id XLOC_028730
gene name dre-mir-129-1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 19047466 ~ 19047555 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055699
GTCCTTTTCAGGTCTTTTTGCGGTCTGGGCTTGCTGTTCCTTGAACCAGTAGCCAGGAAGCCCTTACCCCAAAAAGTATCTGCAGAGGAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000082824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055699 True 90 miRNA 0.51 1 19047466 19047555

Neighbor

gene id symbol gene type direction distance location
XLOC_028729 lepb coding downstream 13661 19031768 ~ 19033805 (-)
XLOC_028728 si:dkey-31f5.11 coding downstream 18605 18985529 ~ 19028861 (-)
XLOC_028727 si:dkey-31f5.8 coding downstream 82302 18952482 ~ 18965164 (-)
XLOC_028726 rap1b coding downstream 108128 18852821 ~ 18939338 (-)
XLOC_028725 cbll1 coding downstream 196101 18836791 ~ 18851365 (-)
XLOC_028731 NA coding upstream 220830 19268385 ~ 19369785 (-)
XLOC_028732 snd1 coding upstream 349390 19396945 ~ 19694108 (-)
XLOC_028733 NA coding upstream 486906 19534461 ~ 19539090 (-)
XLOC_028734 hgfa coding upstream 663102 19710657 ~ 19742303 (-)
XLOC_028735 cacna2d1a coding upstream 721124 19768679 ~ 19884440 (-)
XLOC_028722 NA non-coding downstream 332540 18712763 ~ 18714926 (-)
XLOC_028721 NA non-coding downstream 367774 18654682 ~ 18679692 (-)
XLOC_028720 dre-let-7a-3 non-coding downstream 393205 18654155 ~ 18654261 (-)
XLOC_028719 dre-let-7b non-coding downstream 394225 18653148 ~ 18653241 (-)
XLOC_028709 BX901882.1 non-coding downstream 857946 18189406 ~ 18189520 (-)
XLOC_028736 NA non-coding upstream 852460 19900015 ~ 19901133 (-)
XLOC_028741 NA non-coding upstream 997312 20044867 ~ 20047884 (-)
XLOC_028746 NA non-coding upstream 1075358 20122913 ~ 20124058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_00466505_00489442 NA coding CI01000020 null 466276 ~ 489664 (+)
rainbow trout (Oncorhynchus mykiss) G1713044 NA non-coding NC_048585.1 CM023239.2 18080075 ~ 18083417 (+)
eurasian perch (Perca fluviatilis) G157330 NA non-coding NC_053126.1 CM020923.1 22377944 ~ 22381452 (-)
tiger barb (Puntius tetrazona) G27562 NA non-coding NC_056702.1 CM032071.1 9686499 ~ 9872003 (+)
mexican tetra (Astyanax mexicanus) G157246 NA non-coding NC_035914.1 CM008317.1 8947884 ~ 8948321 (-)