XLOC_028733


Basic Information

Item Value
gene id XLOC_028733
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 19534461 ~ 19539090 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058195
gtcctttttttttttcttttcttccaaAAATCCTTTTATTGCATTTGTAACATTTGGCACAGTACAAATTCATGGTGCTTTTACAAGATAAACCTGCAAAGATCAACATTGACCTTTatcttttatgttttaaaagaaagACTTTTCagtataaatgttgttttttctgttgttgCTGTTGAAATTTTCACTGCATTCTCTGTAGCGTTGTTTAGAAATCACACAGAATGCCCTTTTTAAACAAGACTATCCTCGTTTCTTAAATCCAGCACAGCATCTTAAAACAACTCATCTTTTAAATAGGAGTTATAAGTTAGAAaatagtttcaatttatttttttatataatctgCTTCTCTATTACCAGCCCATGGTAGTTTGTTTttccatatatatttatttataagcatgTACAACAAGAATCAGTCTTTAGGAATTGCACTCTGtacaaaaaaaagtagctcctgtcttttttttctcttgtgcATTCTATTGCATGTTTTTATGCTGGGGTGATGGTGGGCTTATAAGGGGGGCGAGAGGGTCATTTTCACTGAGGTTCTGATTTGTTGAGGACCAGGCTATATCTGAGTCTCTTGTACTTTCTCCTTGGTGTGAGTTTTTATAACAAGGGCTTCAGGAGAAGCTGTGATAGCGCTGGGCATGGTTCGAGGCAGAGAATTTCCAATGCTGTTGCTTTCTGTCCATTTGGCACTGTGGCCTGGTGGCTTGTAGGTGTTATATTTGGGCTTCATAGTGCTGTAGTCCATCTTATGTGGGCTGTAGTCCACATTATGAGGACTGTAATCCTTTTTATACTTGTGAGGGCTGAAGTCACGACTGACATATTCCGCTTTGAGAGGGCTGTACTCTGCCTTGAAAGCAATGTAGTCAGGTTTGAAAAAGCTGTCTGTCTTGAAGGGGCTGTAATCAGGTTTGGGCTTGGGCATACTGTAGTCAGTTTTTGATTTCGGAACACCGTACTCTGTTTTGAACGGACTGAAGTCTGGTTTAGGCGTATGAGATTTGTAGTCCGGTTTGTGGGTGCCATATCCATGTTTGTATGGGCTTTGTTCCGGTTTTTTGTGTACGTGGTAATCCGGCAAGGACTTGTGTGAATAATCCGTGAGTTTCTGAGAGCTGTATTCCAGAGTTGGTTGGTACATATAGTCTGCTTTAGGTTTGTAAGTATTGTAGTCCGATTTGGGTTGATGGATGCTGAAATCTTGCTTGGGCTTATGGGTACTGTATTCTAGTTTTGGTTTGTAGCCGTAGTCAAACTTGTGGGTGTAGTCCGCTTTGTAAATACTGTTATGATTCCTTATTTCTGGTAGAGAAAGTTGCCCCTCATCTGCAATATTGGCAGCAGAAGCCGATGGGGGCAGTTCTTCATCTACCGGAATAATCTCCACAGTTCTGGCTGAAGCAACTGTGCTCCTCTGTTGATGCCTCTTTCgtagtttataaaatacaattagcaTGATTGCTGCTAGCAAGGTTACTGCCACAAAACAACCGATAATGATCTTTGTTGTCTTCATCACCTCATCCAGACTGGTACTGGCTGGATTGGGCGGCTTTCCTGTTGTTACTTTCGAGCCAGGTATAACAGATGGACGACTTGGTGGAGTGTCTGTGCTCTGAAGCAGGACTGTTGGGGTTGAGATAAAAACTGGCTGAAAGACTGAAGGCGATGCTGTGGTGGTGGTGCTGGCACCTGCTGTGGTTGTGGTGGTTTTGGGCTTGGGCATTTCAGATGTGGGGCTCAGCACCTCCACTGTGACTGTGGTGAAGTAACTGAGGTTTGACGTGTTAAGCTCAGCCGCACTTACATTTAGATAGGCTGAAGCATTGGAATTCCCAGCCGCATTGGACACCATGCAGGTGTACATGCCTGTGTCACCTGCAAGTACATTTGAAAAATTCAAAGTCCCATCATTTAGCACTGTTAACCGTGGGTGACTTGATGCATGAGTTAGAATTGTCCCGTTTGGTAGGAGCCATCGTACAGCAGACATGGCGGCTGTTCGACACTTCAGTTCTGCCACACGTTCAGCTGAAATATTCAGGTCTCTTGGGGCATCTGCGATGAAGGGGGCGGAGCACTGCATTGCACCGGTGTCACCCCGATCCAGCTCGACCAACTGGCGGCCTCTCATGTGTGCAGGGGAATGGCAACGCCCACAGCATGTTGAGTTGGTGGGTATGTACTCTCGCAGCCAACGTGCTAACCAAAGTGAATCACAGCCACAGTTCCAGGGGTTGTGGTGGAGGTGAAGTTCCACCAGGTATTTCAGTGGTGTATAGAGGTCATGGGGCAGTGAGCTTAAATTGTTGTGGGCCAAATTCAGCTCCACCAAAGAGGCCAGGTCATCAAAGGCATTTCGCTCAATTAGCCCTATTTGAGAGTTCATGATCCATAACTTTTTGAGTGAAGACAGTCCTCTGAATGAACCTGGTTTGATTTCGGGAAAGAGGTTCTCAGAGATTTCCAGCTCCTCCAGCCCAACGAGAGGTGTGAAGTTGGGCATCTCCCCTCGAATGTTGCACATCCCCAGGTTGAGATACTTGAGGTTAACTAGACCTTCAAAGGCCCCATCAGAGATGTATTCCAGTTTTCTCAGTTCACCCAGATCCAGTCTCATCAGCGATGGCACTCTGTTAAATGCATACGATGGGATGCTTTCAATGGGGTTATTTCTCAGCCACAGCTCTCTCAGCTTGGACAGATACTCAAACGCCCCACTTGGCACCACAGTCAATCTGTTATCAAATAGTTCCAGAGTATTGAGATTGGTTAACCCACTGAAGGCACCTACTTCAATCTGTCTGATAGCATTGCGGCCCAGCTGTAACACTTCTAGGTGATGGAGGTTGCGGAATGAGTCGACCTGCACAGACTCGATGGCGTTTTCCATCAGGTTTAGGTGCCGGGTGGTGCTGGGTATGCCTGGGGGCACACGAGTGAGCCCACGTCTGGTGCACACCACCTTGCTGAGCTGGTTGTTGCAGGAGCAATCAGTCGGGCAACCCTGGGGCCCGGCCGCGGCCACCACCTCCACGCACGCTTGAACCTGGAGACTAAACGTTGTGTCACAAGTATTTGAGTAACGAAGGAGAAGTGAAAGGCCAAGGAATAATGAATAAAGTAAAAGGGGGGATATATTTTATGGATAAAAATGTTTGGAAAGGCTCAACACCTACCTCAAAGGTTTTACACGTCCAATTTTTGCAatcacaaaacagattttttcccTCAAATTCCTATATTCCCATGATTAGCAAAGCCGTCTCTTTCATTTGTCAGAAAACAAGAGATGAATGCCAAAATGGCCCCTAATAAATCCACAAAGGAGCATCCGAGGAGATGTGTAGTGGCTCTGCAGGGCCTCAGAGCTTTAGGCTACAGTACCAATCCAGTTTGGCTCCTATAAAAGTGCTCGCGCTCGCACTATCCACAGATGCTTGTCCTTGGATACCTCCGCTTGACGTTGCTACTAAATGCCCATGTCTCCATAGAGGACCGCTCACACATGCTAAACCAGAGTAGGGGGAGGAAAAAGGGAGGGGTAGTTAGAGGGGGGGAAAGAGAGGAATAAGAATGAAAAATCCAGTCTTTTCAAATGTTCTATGCTTTTGTTTTAAGAATAATAAAAGTGCGTCTTCAATCTTTCCACTCACTTTACTTTGTCCGTCCCCCTCTCAGTACATTTTGTCCGCTCGATTTGTCAGCACCTTGTCCAGCTGAAAAGACTGACACTGCGGTCATTAGCGCATTTCTTTCCTTAAGTAGCTCCGCTTTCCATCTCTGTACCCGCACGCTCGCATGCAGAGAAGGCTGTAGGGTTCTTTATATACGCTTCCCAgtaatccttaattttttttctgtaagaaGTTGATCGTAAGAGCCAGTGAAGGTGTACCAGCGCAGAGACAGCTCCATAGGAAGGCTCATTCACTGGAGAGAGATCGCTCTCTATCTGCCTCGTTCTCCTTCGCTCTCTCTTGCTTTCGAGCGCTCTCTCACTCCCTAGAATGAGAGAAAAAAGAGAAGGGAGAGCGTTTCTCCCCCCGCCCCCCTCCGTGTGACGTTGTGTCGATCAGAGAAGTATCCGTATAGCGCTGCAGTGCCCTGAGCTCAGTGCAAAGTAGGAGCTCTCAGCTTTGTCAGCGGCACAGCTGTCCGGCTCAAGCTGGTGGACGAGCGCTGAGGCAAGGGAAAAGTGGCTCCCCATGGCAACATCTTTTCTTGTGCCCTCCTTtctatgctttttatttttaaccttttttgcCCCGGGTTAGTCCTTCTTCCTACCGCTATGCACCGGTGTTTTCGTTGCGTTTTGTGGTGCAGTAGCAGGCACCCGGGACGCAGACTTGCATGCCTGCTCTTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058195 True 4395 lncRNA 0.46 2 19534461 19539090

Neighbor

gene id symbol gene type direction distance location
XLOC_028731 NA coding downstream 164676 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 coding downstream 486906 19047466 ~ 19047555 (-)
XLOC_028729 lepb coding downstream 500656 19031768 ~ 19033805 (-)
XLOC_028728 si:dkey-31f5.11 coding downstream 505600 18985529 ~ 19028861 (-)
XLOC_028727 si:dkey-31f5.8 coding downstream 569297 18952482 ~ 18965164 (-)
XLOC_028734 hgfa coding upstream 171567 19710657 ~ 19742303 (-)
XLOC_028735 cacna2d1a coding upstream 229589 19768679 ~ 19884440 (-)
XLOC_028736 NA coding upstream 360925 19900015 ~ 19901133 (-)
XLOC_028737 BX323820.1 coding upstream 364694 19903784 ~ 19921410 (-)
XLOC_028738 drd4-rs coding upstream 407204 19946294 ~ 20027571 (-)
XLOC_028722 NA non-coding downstream 819535 18712763 ~ 18714926 (-)
XLOC_028721 NA non-coding downstream 854769 18654682 ~ 18679692 (-)
XLOC_028720 dre-let-7a-3 non-coding downstream 880200 18654155 ~ 18654261 (-)
XLOC_028741 NA non-coding upstream 505777 20044867 ~ 20047884 (-)
XLOC_028746 NA non-coding upstream 583823 20122913 ~ 20124058 (-)
XLOC_028756 BX248410.1 non-coding upstream 856959 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 2053154 21592244 ~ 21628998 (-)

Expression


Co-expression Network