G970000


Basic Information

Item Value
gene id G970000
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34079317 ~ 34080202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1105003
aattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaattactaagtagatgtcctaaccgacgtgtcaaagctatagtttgttaacaagaaatgtgtggagtggttgaaaaatgagtttaattgactctaacctaagtgtatgtaaacttccgacttcagctgtatattGTTTGTCCTCAAGTGTCTGTGCATGTTTTTCAGTATAAAGTAATTtgcagccacttagtgtggacacacATAGATTCCTGTTGAACATTTTCTCTTTAACtaccttattttctcaataacagtctctctccttcacttcatccctctctcccccttctaccTAAATCCTCTCGGTTATATCAGCTTTGTCggtgaacccctcccgcatctgaTCATAGaggcacagcatgatcagaggtgagaggtcacttggtcgggtcaacaggaagtattattaaggAGATGCTTCAcgttgaaatacagatagagatgtagtaaccccagagttaatgatccaaggtcagttttgcatttcacctcctgatgattaaTGACGGACAGTGTAAGAATAAAATAAGAAAAAATGCtttatcatgctctctctcaatccatctgtctctctatttttttgatgtgagagaggaagccagtcccgtcatcgccacttcacccgctcttaagataaccttcgggccaaCTGGGGGCCAAAGGCTGCTtaggagacaccactagagacactatgtaattgtgatgaactgagtgGATATTAGGGCAGCACTGTGATTCATTATTTATATGCTGTCTTCCCTGCTCCTCTGTTCTTACCtatttccctttctgtcttttaaACTCTCTCACGCCTCTCTACCCACCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1105003 True 886 lncRNA 0.41 1 34079317 34080202

Neighbor

gene id symbol gene type direction distance location
LOC110535596 NA coding upstream 388746 33644833 ~ 33690571 (+)
shh LOC106578610 coding upstream 497244 33573702 ~ 33582073 (+)
LOC110535592 lmbr1 coding upstream 605427 33411705 ~ 33473890 (+)
LOC110536614 LOC106578612 coding upstream 692942 33383589 ~ 33386375 (+)
LOC110535589 LOC106578615 coding upstream 844774 32945768 ~ 33234543 (+)
LOC110535603 LOC106578637 coding downstream 95300 34175502 ~ 34177730 (+)
LOC110535604 LOC106578639 coding downstream 103637 34183839 ~ 34427557 (+)
LOC110535606 LOC106578642 coding downstream 347856 34428058 ~ 34430799 (+)
acad11 acad11 coding downstream 369520 34449722 ~ 34515337 (+)
LOC110535611 LOC106578646 coding downstream 479139 34559341 ~ 34713016 (+)
G969838 NA non-coding upstream 204045 33874938 ~ 33875272 (+)
G969834 NA non-coding upstream 215835 33862588 ~ 33863482 (+)
G969826 NA non-coding upstream 224749 33849063 ~ 33854568 (+)
G969824 NA non-coding upstream 233957 33845137 ~ 33845360 (+)
G969766 NA non-coding upstream 270278 33808790 ~ 33809039 (+)
G970023 NA non-coding downstream 31039 34111241 ~ 34111498 (+)
G970039 NA non-coding downstream 55579 34135781 ~ 34136012 (+)
G970041 NA non-coding downstream 56482 34136684 ~ 34136897 (+)
G969859 NA non-coding downstream 75995 34156197 ~ 34156846 (+)
G970281 NA non-coding downstream 98362 34178564 ~ 34178802 (+)
G969752 LOC106578632 other upstream 284256 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 474507 33604513 ~ 33604810 (+)
G969455 LOC106578609 other upstream 475643 33603047 ~ 33603674 (+)
G970054 LOC106578636 other downstream 83614 34163816 ~ 34170987 (+)
G970283 NA other downstream 99501 34179703 ~ 34180048 (+)
G970489 LOC106578645 other downstream 437624 34516457 ~ 34522340 (+)
G972725 NA other downstream 2169771 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 3461894 37542062 ~ 37543202 (+)

Expression


Co-expression Network