G970054 (LOC106578636)


Basic Information

Item Value
gene id G970054
gene name LOC106578636
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34163816 ~ 34170987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1105066
GGAAATCACATCATTGGGCGTCATGTCACAATCGCTGTACACAAACATGGTCCTTTTTTTGTACATAAAATGCTTTTTGGTGATTTAGAAAATGCTATATTTTTTACCGCTGCTGGTGACTTCACAAATGAAAAACATATTATTTAGTGTTGTTCTTCCAGTTAACTGGCCATCGCTACACAGGGTGTGTCccaaattggcaccctattctctatgtagtatacactacttttgagcacttatatagggaatagggtgccaatttggCTGCAGACACTatgtgaggaggggaggaaggctcaGACTAGGAATTTGCTACATTGTTCATCTGAATGATCCCTTCGTATAGGAAAACGCTTAATCAAAACAAAGACGAGAGGTTTACTTTCTTATAAAATATCAAAAAGGTATAAAAACAAAAgtcaaaagaaaacaaaaactaTACtcttatgaaaaaaaaaaaacacagaaccCTTTCTACAGTAGTGATAAAGTTCATCATAGATCCCAAGAGCAAAGTACGTTTTAAGACACTGAGATGAGAGATGGGGACCCTAACTCGGCCCTATTGTGCGAAAGGCCGAGTGGAAACCATCGCAAACTGATCTCTGAAATGTAAAACGTGAAACACATCTGGAAACTACATATCCCACGGGGGATAGGTTTGTGAAACTACATACCCcataatggaggagaggagaaccaccCTCCCTCACCTGCAGAACACTTGTATGCCCTCATGCCTTGCTCTAGTAAAATACATAGGAAATGTTTTAAGACAGGCAGCGCTTTTTTTGTCCGTAAATCTTTTTGGTCCTGTGTGCAAAAAAGATGCacatagatacatacatacatacacgcatatgacaaaataaaaaaagaacTAACAGCCAAGGCACCTTGATATAGTTTTGTACACCAATGTATACCAAAAATATAAGTTATCAGGCTTGTTGAGTTGCGTTTGTTCTTTGTTGCACAGTCACTGAACTCATGTGAGGAGTTCATTTAGAGACAACAACAACTGGGTtgtcatctctctttccctcccctttaAGACACCAGTTGTTTAGCCTGCAGCTCCATCTCTGCCGCCCGCTTGAGGGCCACATCCACTAGGAGCTGGAAGCCACTGAAGTCCTGTGTGAtgtctgggggggtggggggaggggtgtTGAAGAGCCCACTCTGGGGGCTTAGGTTACACTCCATGGTGGTGTGGGTGGTGGTCACTGGCGGGGCGCCCAGGCCCAACCCTTCCTCCCGGCATCTGAAGAGCCCCAGAGCCTCTGTGGTGGAATGCAGCAGCTCTGCGGCCCTACTGCCATCTGTGTTAATGCTGGAGAGGAAGCAGGAGAGGTAGGAGGGGGGGCTCGAGCCCTGTTTCTGCATGGCCATGGTGGTAACAGTGGTGTGACAGATGACAGAGGGCCGGGGAGCCACGGTGGTGTCGGGCcccagggaagaggagggggacatCTTAGGGGACGATACGGCCTTCAGCAGGATGCCGGGGCTGGGGAGACCTGCCTCGAAGCTGGAGGGGTGCAGCGCCCGCTGGTCGTAGCTGTCCTCGGGGCCCGTGGCGTGCTTTGGTGACTGAGAGCTGGAATCAGAGAAGCCCCCGTCGCCTCCCTTGCTGCCTTTCCGGGAGAAGGTGAACCGGTTAGGGTCTTTACCGTCTTTACGCAGCATCTCCGGGAGGAGCCGCCGACGTGCGTTGATGAACCAGTTGCAAACCTGTAGTGTGGAGAGCTGCGTCTGCTTGGAGAGCAGGGATTTCTCCTGTTCAGAGGGGTAGGCATTGTAGCGATGCTCATATAGCCAGTCCCTGAGGATCTGCACTGACTCCTTGGGTAGGTTCCCGCGCCGCTTCCTTTTCCCACTGCTCCCTCCCGTACTGGATGACAGGTCCAGGGGGGCGTCCATGCTGTCCTCCTCATCCGTCTCACTGGCCGACAACGTCATCATGCCCTTTTTTGTCTTCATATCCGTTAGAAATCCCCTTTTCACGTTGGTCACGAGAGGAGCGCAGtaatttttttccttcttcttcTCGAATTGTATTCGTTTAATTGGCAGATCCTTTTTCTCGGGATATTCCACACCTATACTCCAAATGGTTAAACGGCTTCGTTCATTGAAAATAAATCAAGTCATAGAACCGTTCCTCGGCTTCTTCATTTGTTTGAGGCGCAATGGGCTAGTTATGCCAGGGGTAGGCTACCTGAAGTCCGCTGCTCGACTTAGCGAAGCCTTTCT

Function

NR:

description
homeobox protein AKR-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1105066 True 2262 TUCP 0.49 3 34163816 34170987

Neighbor

gene id symbol gene type direction distance location
LOC110535601 LOC106590111 coding upstream 8938 33908713 ~ 34154878 (+)
LOC110535596 NA coding upstream 473245 33644833 ~ 33690571 (+)
shh LOC106578610 coding upstream 581743 33573702 ~ 33582073 (+)
LOC110535592 lmbr1 coding upstream 689926 33411705 ~ 33473890 (+)
LOC110536614 LOC106578612 coding upstream 777441 33383589 ~ 33386375 (+)
LOC110535603 LOC106578637 coding downstream 4515 34175502 ~ 34177730 (+)
LOC110535604 LOC106578639 coding downstream 12852 34183839 ~ 34427557 (+)
LOC110535606 LOC106578642 coding downstream 257071 34428058 ~ 34430799 (+)
acad11 acad11 coding downstream 278735 34449722 ~ 34515337 (+)
LOC110535611 LOC106578646 coding downstream 388354 34559341 ~ 34713016 (+)
G969859 NA non-coding upstream 6970 34156197 ~ 34156846 (+)
G970041 NA non-coding upstream 26919 34136684 ~ 34136897 (+)
G970039 NA non-coding upstream 27804 34135781 ~ 34136012 (+)
G970023 NA non-coding upstream 52318 34111241 ~ 34111498 (+)
G970281 NA non-coding downstream 7577 34178564 ~ 34178802 (+)
G970282 LOC106609167 non-coding downstream 8126 34179113 ~ 34179351 (+)
G970303 NA non-coding downstream 21629 34192616 ~ 34193200 (+)
G970323 NA non-coding downstream 56702 34227689 ~ 34228208 (+)
G970335 NA non-coding downstream 68699 34239686 ~ 34239895 (+)
G969752 LOC106578632 other upstream 368755 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 559006 33604513 ~ 33604810 (+)
G969455 LOC106578609 other upstream 560142 33603047 ~ 33603674 (+)
G970283 NA other downstream 8716 34179703 ~ 34180048 (+)
G970489 LOC106578645 other downstream 346839 34516457 ~ 34522340 (+)
G972725 NA other downstream 2078986 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 3371109 37542062 ~ 37543202 (+)
G973918 NA other downstream 3480151 37651138 ~ 37679368 (+)

Expression


Co-expression Network