G970280


Basic Information

Item Value
gene id G970280
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34175432 ~ 34177724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1105302
tctgtatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttatatgtagcttttataattttgttcactATAGATTTAGTATCAACAAATGTCTATTTAACCAGTTGACACCATTTTTTTTAGGTTGATACAGAGTAATTCCAACCCATTCACTTCAAACAAAATATATCAATGTATGGGAAATAATACAAGCTCCTTCAAGCATCACTTGGAACTAACATTTTGTTGTTTAGTCTATTTACAACACAACATTTTGAAATATAACATGTGCGTGCACTGCACTTCAATTCGGGTACAATACAAAACTTAGAAAATGTCATTAAGGCAATGTTgaagtcacaaacacacagaatcAAAGTGCAATCGGTttaaagagaatgagagagagagtgagagagaaagagagagaggctgatTAACATTTGAATGCAGCAGTTGAATAACTATTGGTTTCAAATGTGACCGTTTTGCTCAATGTACATTTTAGACAGTGATGCTGCCATCGACTTGGCCAGCTCTTCGTCCCGTTTCCTTTGCATCTGAGAGTGATGAAACCACTCGTCATACTCTGGGTTGGCCACACACCTGTCCAGCAAGACATCATAGTGTCCGTTGCTGAGCCAACTCAACCAGACAGCGGGTTTGGACGAATCATCTTCCCCCAGGTAGTGCACCATGGTTGAAACCGTGGGACTCTCCAAGCTACCTCCTGTGGTTAGGTAAATGTTCACATTCAACATCTGACTCATCGCCAGAAGCTCCGGATAGCCCGCCCAGGCGCCGTCCTGAGCTGCATTGATCAAGAACTCCCCGACATCTCCCTCAATGATGGGGTTAAACTCATCCAGGTGGTCGGCGATATGGTGCATTGTCTGCTCTCTCAGCTCGCTGTGCATAGACTGCTCTCCGTAGGCGGCTTTGCACACCGCCCTGTACAGACAGTTGCCGTCAGGGATGATGTGGAATCTGTACTTGTGTGCCCTCTCCTGAAGGTACTTGTTCTGTTTCTCCACCTCCGCTATGTAGCACGTCACCTTGTCGTTGATGTCACCCCTTTTTGCATCTCTCCGCGGAGACGGCTCCTGTAGGACACGGAGCTCAAAGAGCTGCGCCTCGCCTGATGGAGAGTCCAGGTCTGAGTATTCACTGTCATTTTTACTTTCACGGGAGTCCACGACGTTCTGGCCTAAATGGGTGGACTGCGCCTCTAAGTTCTGATGGCGTTTTGGGTTCACGATGTCACTTGTAACGGTTTTTCCCTTCCCATTTGCCATGTTCATTCTCTCCCCACACTTTCTGTAACTTGGTCCATCGTTCTTGTCGACGTTTATCAGGTTATTTTCACGTTCAGCGTTTTGACTATCACTGAGTAGATCCCCTCTACCTCTCAAGTGATCAATGAAGTCCACAATCAAGTCTGTGTCCAAATGATCATCATGGTCACGCGCCTGAATCACAACATCTTGCGAATATGAGTCCGACGGAGCCCGTTTTGTCTGGGTCTCCTTTATGATGTGCACTGGTACGTATCTCTCAACTCCGTCAGGCCGACGAATGATTATCTCTGCGGTAGAAGTGTAGTAGACTGGCTTCATGGAAGCAGCCTCATAACATGAAAAAGCAGCGGGCATGTTTGCGGTAGATTGAGTCTCTCCTACCGGATTCCCGTTAGTCACTGTTGGAGTAAGCCCACTCGGTTTATTATTTGCAGAGTTCGTTGTTGTCCTGGGCAAATGGTCAGTAATGGTACCACTTGTGATAGTTATCGGAACTTTGCGAGAGGATCCGGGATAGTGTGTCAACGCACTGCTGTACAACTGCATTTTGGAAGACTCGCCTTTATACAAAACGCTAGAGCCCCAAGTGTTACGGAAAGATGACAACAAAGGCCCAAAATACACCCTGTCATCAATAACAGCTAAGTTGTAGGATACGTTTCCATGGATCCAGTGTCTTGTACCCGTTGTCACTCATAGGACCGATTTTAGCCATCTTGCGTCAGCGTAGTCTCCCTAAATTTAGACCTGAAAAGTGTAACCGGACACTCTCCGCTTCGTCTCCCCTCATAGCCAGCTGTTGAAGTAGTTGTACGTAGAGCAGTAATGACCACAGCGAGGGAATTAAAATGTTTTGATGTGTCACAGTACACTCTCGGAAGTTCTCTAGTTCCAGTCCGCCGAGTCAGGGCGGCGTCGCCACTCTGGAATGCACAAAGCGTGCCAAAAGCTACATCACTATTAAGCGCACGGATATGCGGAAAAATGACTCACAAC
>TU1105301
tctgtatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttatatgtagcttttataattttgttcactATAGATTTAGTATCAACAAATGTCTATTTAACCAGTTGACACCATTTTTTTTAGGTTGATACAGAGTAATTCCAACCCATTCACTTCAAACAAAATATATCAATGTATGGGAAATAATACAAGCTCCTTCAAGCATCACTTGGAACTAACATTTTGTTGTTTAGTCTATTTACAACACAACATTTTGAAATATAACATGTGCGTGCACTGCACTTCAATTCGGGTACAATACAAAACTTAGAAAATGTCATTAAGGCAATGTTgaagtcacaaacacacagaatcAAAGTGCAATCGGTttaaagagaatgagagagagagtgagagagaaagagagagaggctgatTAACATTTGAATGCAGCAGTTGAATAACTATTGGTTTCAAATGTGACCGTTTTGCTCAATGTACATTTTAGACAGTGATGCTGCCATCGACTTGGCCAGCTCTTCGTCCCGTTTCCTTTGCATCTGAGAGTGATGAAACCACTCGTCATACTCTGGGTTGGCCACACACCTGTCCAGCAAGACATCATAGTGTCCGTTGCTGAGCCAACTCAACCAGACAGCGGGTTTGGACGAATCATCTTCCCCCAGGTAGTGCACCATGGTTGAAACCGTGGGACTCTCCAAGCTACCTCCTGTGGTTAGGTAAATGTTCACATTCAACATCTGACTCATCGCCAGAAGCTCCGGATAGCCCGCCCAGGCGCCGTCCTGAGCTGCATTGATCAAGAACTCCCCGACATCTCCCTCAATGATGGGGTTAAACTCATCCAGGTGGTCGGCGATATGGTGCATTGTCTGCTCTCTCAGCTCGCTGTGCATAGACTGCTCTCCGTAGGCGGCTTTGCACACCGCCCTGTACAGACAGTTGCCGTCAGGGATGATGTGGAATCTGTACTTGTGTGCCCTCTCCTGAAGGTACTTGTTCTGTTTCTCCACCTCCGCTATGTAGCACGTCACCTTGTCGTTGATGTCACCCCTTTTTGCATCTCTCCGCGGAGACGGCTCCTGTAGGACACGGAGCTCAAAGAGCTGCGCCTCGCCTGATGGAGAGTCCAGGTCTGAGTATTCACTGTCATTTTTACTTTCACGGGAGTCCACGACGTTCTGGCCTAAATGGGTGGACTGCGCCTCTAAGTTCTGATGGCGTTTTGGGTTCACGATGTCACTTGTAACGGTTTTTCCCTTCCCATTTGCCATGTTCATTCTCTCCCCACACTTTCTGTAACTTGGTCCATCGTTCTTGTCGACGTTTATCAGGTTATTTTCACGTTCAGCGTTTTGACTATCACTGAGTAGATCCCCTCTACCTCTCAAGTGATCAATGAAGTCCACAATCAAGTCTGTGTCCAAATGATCATCATGGTCACGCGCCTGAATCACAACATCTTGCGAATATGAGTCCGACGGAGCCCGTTTTGTCTGGGTCTCCTTTATGATGTGCACTGGTACGTATCTCTCAACTCCGTCAGGCCGACGAATGATTATCTCTGCGGTAGAAGTGTAGTAGACTGGCTTCATGGAAGCAGCCTCATAACATGAAAAAGCAGCGGGCATGTTTGCGGTAGATTGAGTCTCTCCTACCGGATTCCCGTTAGTCACTGTTGGAGTAAGCCCACTCGGTTTATTATTTGCAGAGTTCGTTGTTGTCCTGGGCAAATGGTCAGTAATGGTACCACTTGTGATAGTTATCGGAACTTTGCGAGAGGATCCGGGATAGTGTGTCAACGCACTGCTGTACAACTGCATTTTGGAAGACTCGCCTTTATACAAAACGCTAGAGCCCCAAGTGTTACGGAAAGATGACAACAAAGGCCCAAAATACACCCTGTCATCAATAACAGCTAAGTTGTAGGATACGTTTCCATGGATCCAGTGTCTTGTACCCGTTGTCACTCATAGGACCGATTTTAGCCATCTTGCGTCAGCGTAGTCTCCCTAAATTTAGACCTGAAAAGTGTAACCGGACACTCTCCGCTTCGTCTCCCCTCATAGCCAGCTGTTGAAGTAGTTGTACGTAGAGCAGTAATGACCACAGCGAGGGAATTAA
>TU1105300
tctgtatggaacatttctgggatcttttatttcagctcatgaaacatgggaccaacactttatatgtagcttttataattttgttcactATAGATTTAGTATCAACAAATGTCTATTTAACCAGTTGACACCATTTTTTTTAGGTTGATACAGAGTAATTCCAACCCATTCACTTCAAACAAAATATATCAATGTATGGGAAATAATACAAGCTCCTTCAAGCATCACTTGGAACTAACATTTTGTTGTTTAGTCTATTTACAACACAACATTTTGAAATATAACATGTGCGTGCACTGCACTTCAATTCGGGTACAATACAAAACTTAGAAAATGTCATTAAGGCAATGTTgaagtcacaaacacacagaatcAAAGTGCAATCGGTttaaagagaatgagagagagagtgagagagaaagagagagaggctgatTAACATTTGAATGCAGCAGTTGAATAACTATTGGTTTCAAATGTGACCGTTTTGCTCAATGTACATTTTAGACAGTGATGCTGCCATCGACTTGGCCAGCTCTTCGTCCCGTTTCCTTTGCATCTGAGAGTGATGAAACCACTCGTCATACTCTGGGTTGGCCACACACCTGTCCAGCAAGACATCATAGTGTCCGTTGCTGAGCCAACTCAACCAGACAGCGGGTTTGGACGAATCATCTTCCCCCAGGTAGTGCACCATGGTTGAAACCGTGGGACTCTCCAAGCTACCTCCTGTGGTTAGGTAAATGTTCACATTCAACATCTGACTCATCGCCAGAAGCTCCGGATAGCCCGCCCAGGCGCCGTCCTGAGCTGCATTGATCAAGAACTCCCCGACATCTCCCTCAATGATGGGGTTAAACTCATCCAGGTGGTCGGCGATATGGTGCATTGTCTGCTCTCTCAGCTCGCTGTGCATAGACTGCTCTCCGTAGGCGGCTTTGCACACCGCCCTGTACAGACAGTTGCCGTCAGGGATGATGTGGAATCTGTACTTGTGTGCCCTCTCCTGAAGGTACTTGTTCTGTTTCTCCACCTCCGCTATGTAGCACGTCACCTTGTCGTTGATGTCACCCCTTTTTGCATCTCTCCGCGGAGACGGCTCCTGTAGGACACGGAGCTCAAAGAGCTGCGCCTCGCCTGATGGAGAGTCCAGGTCTGAGTATTCACTGTCATTTTTACTTTCACGGGAGTCCACGACGTTCTGGCCTAAATGGGTGGACTGCGCCTCTAAGTTCTGATGGCGTTTTGGGTTCACGATGTCACTTGTAACGGTTTTTCCCTTCCCATTTGCCATGTTCATTCTCTCCCCACACTTTCTGTAACTTGGTCCATCGTTCTTGTCGACGTTTATCAGGTTATTTTCACGTTCAGCGTTTTGACTATCACTGAGTAGATCCCCTCTACCTCTCAAGTGATCAATGAAGTCCACAATCAAGTCTGTGTCCAAATGATCATCATGGTCACGCGCCTGAATCACAACATCTTGCGAATATGAGTCCGACGGAGCCCGTTTTGTCTGGGTCTCCTTTATGATGTGCACTGGTACGTATCTCTCAACTCCGTCAGGCCGACGAATGATTATCTCTGCGGTAGAAGTGTAGTAGACTGGCTTCATGGAAGCAGCCTCATAACATGAAAAAGCAGCGGGCATGTTTGCGGTAGATTGAGTCTCTCCTACCGGATTCCCGTTAGTCACTGTTGGAGTAAGCCCACTCGGTTTATTATTTGCAGAGTTCGTTGTTGTCCTGGGCAAATGGTCAGTAATGGTACCACTTGTGATAGTTATCGGAACTTTGCGAGAGGATCCGGGATAGTG

Function

NR:

description
OTU domain-containing protein 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1105302 False 2293 lncRNA 0.46 1 34175432 34177724
TU1105301 False 2144 lncRNA 0.46 1 34175581 34177724
TU1105300 True 1816 lncRNA 0.46 1 34175909 34177724

Neighbor

gene id symbol gene type direction distance location
LOC110535602 LOC106578636 coding downstream 4347 34163743 ~ 34171085 (-)
LOC110535600 LOC106578631 coding downstream 311942 33859835 ~ 33863490 (-)
LOC110535599 LOC106578604 coding downstream 315809 33848052 ~ 33859623 (-)
LOC110535598 LOC106578632 coding downstream 380246 33787375 ~ 33795186 (-)
trnar-ccg NA coding downstream 440708 33734652 ~ 33734724 (-)
LOC110535608 LOC106578644 coding upstream 266796 34444520 ~ 34450214 (-)
LOC110535609 LOC106578643 coding upstream 313321 34491045 ~ 34499127 (-)
LOC110535610 LOC106578645 coding upstream 338731 34516455 ~ 34522431 (-)
LOC110536615 NA coding upstream 355563 34533287 ~ 34535122 (-)
LOC110535616 LOC106578707 coding upstream 632499 34810223 ~ 34978953 (-)
G970269 NA non-coding downstream 12551 34162654 ~ 34162881 (-)
G970267 NA non-coding downstream 13884 34161337 ~ 34161548 (-)
G970233 NA non-coding downstream 18898 34156196 ~ 34156534 (-)
G970232 NA non-coding downstream 19413 34153671 ~ 34156019 (-)
G970260 NA non-coding downstream 33604 34141628 ~ 34141828 (-)
G970613 NA non-coding upstream 9189 34186913 ~ 34187426 (-)
G970624 NA non-coding upstream 34005 34211729 ~ 34211941 (-)
G970650 NA non-coding upstream 69749 34247473 ~ 34340588 (-)
G970704 NA non-coding upstream 166635 34344359 ~ 34344648 (-)
G970734 NA non-coding upstream 208079 34385803 ~ 34388772 (-)
G970066 NA other downstream 300160 33874814 ~ 33875272 (-)
G968868 NA other downstream 1507942 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 1625846 32489195 ~ 32549643 (-)
G967535 NA other downstream 2122239 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 2784088 31391036 ~ 31391344 (-)
G971137 NA other upstream 659248 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 1694945 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 3036160 37213884 ~ 37214896 (-)
G974756 NA other upstream 3236654 37414378 ~ 37415635 (-)

Expression


Co-expression Network