G970489 (LOC106578645)


Basic Information

Item Value
gene id G970489
gene name LOC106578645
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34516457 ~ 34522340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1105517
AAAAACAAGTTCAGCATTTATTCTTAATGAGTACTGCCCCAAAATATAAAGAACATAACATTTTAAAGAGAAGATAAAAATGACGTCATCAGTTCTCACACTTTCTCCGATCCACACAATAGCGCAGTGCCTTCAGGTCTAGAGATTGTCTCCTACTCCCCTCATAAAGCAAACATTCCAATCTGTCTAAAAGATATACTCCTCTCCACTAATGGAACATCAAAGAACATTCTTATCTGTCTAAAGAGATATACCCTCCTTCTCCATTAAACCCGCAAGGTACAGACAATTCATTCGTTTTACCTACATTTTCAGTCCTAGTTTAACCAAAAACCCATACATTTCATACCACAACATAATAGTATTAAAATGAATGGTTCTaatttaaatgtatacataattaatcATTTCAACTATAATTTCCTCCAACACTGGGGCAAGCTCTCATGACTCCTACATTTTGACTAAATTTGAATCTGATATATGCACAGAATTACCAAAGAATCACCTTTTCAAAAATACaattctataaaaaaaaaaaaaaaatgtgtaaatcAGCAGATCATAAAATACAATATTAAAGGGGCTCTCAAAGATACTGTATACTTGTCCTCAGCAATGTGTTTCCATTATAcgtatatattataatatagcattttaaaatacatgtaaaaaccAATTTGTTTACGAAGGTAATATATAATGTACAGTTCATTAAAGCAGTAGCGCTTCAGCAAATCACTTCGCTTCAGCAAACAAACTTGTTTTTTCTTCCGTGCGCTCCTCTTGCGTCTCTGTCCCTGGGGAAAGAGTCAAGTTATTTATTTGTTCACGTCAAACATTTTACTTTCGATAGAGAGTCGCAAATAAATGTAACAGATTGGTGAACAGTTTTGAACTATTTTGTGTAATtggtttttaaatgttttggatGAACTCTGTGCACCCCGCTTGCAAATAGAATTTAGCTCCGGGGACAAAAAAAGTTTGATTGATTGACTCAGATGGaagggggggggttgtgtgtgtgggggggggttgtgtgtgtgggggggggggggggttgtgtggggTGGGGCGAGTCGTCCCATAACGGAATACGCTCCGGGTCGTCCTCTTGGCTTCGCCTTCTTGCTCTCATTCTGAACCTGCCTCCGTACTCTGGTTACCTGGAAGAGCAATGACATGACGTAAGACTTCAATGACACAAGGTTGAATGCAGGTCGACCGAGCATTGCTAAGGTAGCCTCTCAGAGACTTGGGCAACTCTTGCTTAGAcggaggctgtcctaatatggacaccgtacatGTACCGTGTCATGTCATCAGTATGTTTGAGGATCTCACGAAACAAACAGTTCTGATATTAACATATGGACCCGTATCATATGATGGTCTGATCCTGTGTTGTCGTGGTATGTTGTGTACCTGTAGGGAGGCACTGGGGTTGTtgctgaggagagagaaggatcCCACTCTGGATTTATACTTGTTCTTCTTGGTCCCCGACTGGCCTAGGTGTCTCCTGGCCcgctctgtctggaggaacaacattcCCGTGGGATCATTTAGA
>TU1105518
AAAAACAAGTTCAGCATTTATTCTTAATGAGTACTGCCCCAAAATATAAAGAACATAACATTTTAAAGAGAAGATAAAAATGACGTCATCAGTTCTCACACTTTCTCCGATCCACACAATAGCGCAGTGCCTTCAGGTCTAGAGATTGTCTCCTACTCCCCTCATAAAGCAAACATTCCAATCTGTCTAAAAGATATACTCCTCTCCACTAATGGAACATCAAAGAACATTCTTATCTGTCTAAAGAGATATACCCTCCTTCTCCATTAAACCCGCAAGGTACAGACAATTCATTCGTTTTACCTACATTTTCAGTCCTAGTTTAACCAAAAACCCATACATTTCATACCACAACATAATAGTATTAAAATGAATGGTTCTaatttaaatgtatacataattaatcATTTCAACTATAATTTCCTCCAACACTGGGGCAAGCTCTCATGACTCCTACATTTTGACTAAATTTGAATCTGATATATGCACAGAATTACCAAAGAATCACCTTTTCAAAAATACaattctataaaaaaaaaaaaaaaatgtgtaaatcAGCAGATCATAAAATACAATATTAAAGGGGCTCTCAAAGATACTGTATACTTGTCCTCAGCAATGTGTTTCCATTATAcgtatatattataatatagcattttaaaatacatgtaaaaaccAATTTGTTTACGAAGGTAATATATAATGTACAGTTCATTAAAGCAGTAGCGCTTCAGCAAATCACTTCGCTTCAGCAAACAAACTTGTTTTTTCTTCCGTGCGCTTATTTATTTGTTCACGTCAAACATTTTACTTTCGATAGAGAGTCGCAAATAAATGTAACAGATTGGTGAACAGTTTTGAACTATTTTGTGTAATtggtttttaaatgttttggatGAACTCTGTGCACCCCGCTTGCAAATAGAATTTAGCTCCGGGGACAAAAAAAGTTTGATTGATTGACTCAGATGGaagggggggggttgtgtgtgtgggggggggttgtgtgtgtgggggggggggggggttgtgtggggTGGGGCGAGTCGTCCCATAATGGAATACGCTCCGGCTCGTCCTTTTGGCTTCGCCTGGCTTCGCCTTCGTCCTCTCATTCTGCACCTGCCTCCGTACTCTGGTTACCTGGAAGATTGATTAACTCAGATGGGCGGGGGGGGATTTCGTGGGTTCGGGCGAATCCCATAACGGAATACGCTCCGGGTCGTCCTCTTGGCTTCGCCTTCTTGCTCTCATTCTGAACCTGCCTCCGTACTCTGGTT
>TU1105519
AAAAACAAGTTCAGCATTTATTCTTAATGAGTACTGCCCCAAAATATAAAGAACATAACATTTTAAAGAGAAGATAAAAATGACGTCATCAGTTCTCACACTTTCTCCGATCCACACAATAGCGCAGTGCCTTCAGGTCTAGAGATTGTCTCCTACTCCCCTCATAAAGCAAACATTCCAATCTGTCTAAAAGATATACTCCTCTCCACTAATGGAACATCAAAGAACATTCTTATCTGTCTAAAGAGATATACCCTCCTTCTCCATTAAACCCGCAAGGTACAGACAATTCATTCGTTTTACCTACATTTTCAGTCCTAGTTTAACCAAAAACCCATACATTTCATACCACAACATAATAGTATTAAAATGAATGGTTCTaatttaaatgtatacataattaatcATTTCAACTATAATTTCCTCCAACACTGGGGCAAGCTCTCATGACTCCTACATTTTGACTAAATTTGAATCTGATATATGCACAGAATTACCAAAGAATCACCTTTTCAAAAATACaattctataaaaaaaaaaaaaaaatgtgtaaatcAGCAGATCATAAAATACAATATTAAAGGGGCTCTCAAAGATACTGTATACTTGTCCTCAGCAATGTGTTTCCATTATAcgtatatattataatatagcattttaaaatacatgtaaaaaccAATTTGTTTACGAAGGTAATATATAATGTACAGTTCATTAAAGCAGTAGCGCTTCAGCAAATCACTTCGCTTCAGCAAACAAACTTGTTTTTTCTTCCGTGCGCTCCTCTTGCGTCTCTGTCCCTGGGGAAAGAGTCAAGTTATTTATTTGTTCACGTCAAACATTTTACTTTCGATAGAGAGTCGCAAATAAATGTAACAGATTGGTGAACAGTTTTGAACTATTTTGTGTAATtggtttttaaatgttttggatGAACTCTGTGCACCCCGCTTGCAAATAGAATTTAGCTCCGGGGACAAAAAAAGTTTGATTGATTGACTCAGATGGaagggggggttgtgtggggTGGGGCGAGTCGTCCCATAATGGAATACGCTCCGGCTCGTCCTTTTGGCTTCGCCTGGCTTCGCCTTCGTCCTCTCATTCTGCACCTGCCTCCGTACTCTGGTTACCTGGAAGATTGATTAACTCAGATGGGCGGGGGGGGATTTCGTGGGTTCGGGCGAATCCCATAACGGAATACGCTCCGGGTCGTCCTCTTGGCTTCGCCTTCTTGCTCTCATTCTGAACCTGCCTCCGTACTCTGGTT
>TU1105522
AAAAACAAGTTCAGCATTTATTCTTAATGAGTACTGCCCCAAAATATAAAGAACATAACATTTTAAAGAGAAGATAAAAATGACGTCATCAGTTCTCACACTTTCTCCGATCCACACAATAGCGCAGTGCCTTCAGGTCTAGAGATTGTCTCCTACTCCCCTCATAAAGCAAACATTCCAATCTGTCTAAAAGATATACTCCTCTCCACTAATGGAACATCAAAGAACATTCTTATCTGTCTAAAGAGATATACCCTCCTTCTCCATTAAACCCGCAAGGTACAGACAATTCATTCGTTTTACCTACATTTTCAGTCCTAGTTTAACCAAAAACCCATACATTTCATACCACAACATAATAGTATTAAAATGAATGGTTCTaatttaaatgtatacataattaatcATTTCAACTATAATTTCCTCCAACACTGGGGCAAGCTCTCATGACTCCTACATTTTGACTAAATTTGAATCTGATATATGCACAGAATTACCAAAGAATCACCTTTTCAAAAATACaattctataaaaaaaaaaaaaaaatgtgtaaatcAGCAGATCATAAAATACAATATTAAAGGGGCTCTCAAAGATACTGTATACTTGTCCTCAGCAATGTGTTTCCATTATAcgtatatattataatatagcattttaaaatacatgtaaaaaccAATTTGTTTACGAAGGTAATATATAATGTACAGTTCATTAAAGCAGTAGCGCTTCAGCAAATCACTTCGCTTCAGCAAACAAACTTGTTTTTTCTTCCGTGCGCTTATTTATTTGTTCACGTCAAACATTTTACTTTCGATAGAGAGTCGCAAATAAATGTAACAGATTGGTGAACAGTTTTGAACTATTTTGTGTAATtggtttttaaatgttttggatGAACTCTGTGCACCCCGCTTGCAAATAGAATTTAGCTCCGGGGACAAAAAAAGTTTG
>TU1105525
AAAAACAAGTTCAGCATTTATTCTTAATGAGTACTGCCCCAAAATATAAAGAACATAACATTTTAAAGAGAAGATAAAAATGACGTCATCAGTTCTCACACTTTCTCCGATCCACACAATAGCGCAGTGCCTTCAGGTCTAGAGATTGTCTCCTACTCCCCTCATAAAGCAAACATTCCAATCTGTCTAAAAGATATACTCCTCTCCACTAATGGAACATCAAAGAACATTCTTATCTGTCTAAAGAGATATACCCTCCTTCTCCATTAAACCCGCAAGGTACAGACAATTCATTCGTTTTACCTACATTTTCAGTCCTAGTTTAACCAAAAACCCATACATTTCATACCACAACATAATAGTATTAAAATGAATGGTTCTaatttaaatgtatacataattaatcATTTCAACTATAATTTCCTCCAACACTGGGGCAAGCTCTCATGACTCCTACATTTTGACTAAATTTGAATCTGATATATGCACAGAATTACCAAAGAATCACCTTTTCAAAAATACaattctataaaaaaaaaaaaaaaatgtgtaaatcAGCAGATCATAAAATACAATATTAAAGGGGCTCTCAAAGATACTGTATACTTGTCCTCAGCAATGTGTTTCCATTATAcgtatatattataatatagcattttaaaatacatgtaaaaaccAATTTGTTTACGAAGGTAATATATAATGTACAGTTCATTAAAGCAGTAGCGCTTCAGCAAATCACTTCGCTTCAGCAAACAAACTTGTTTTTTCTTCCGTGCGCTCCTCTTGCGTCTctgtctcttctgtctgtccAATAGCACATCCGATGGCAAGTCGTCACCTAGCCACCTGTGGCTGTTTCTGGTTATGGGTCTTTCTTGCAGCAGATGGCTTCAGGCGCACAAGCCCTTCATTCTGTGAGAAGAACTTTCCTCCGGTGGTCTGCCCGCTGACACAGTTCTTTTCCTGTGATGTCCCAGTACAGTCTGCACCATGTGTGAGCTGGGGCAAGCTGCCCTGCAGGCAGAGAAAACTTAGGCACACCCAAAGAGCAACCTCCATGATGGTCCAGGCACTGGGGCCC
>TU1105524
AGGTCGACCGAGCATTGCTAAGGTAGCCTCTCAGAGACTTGGGCAACTCTTGCTTAGAcggaggctgtcctaatatggacaccgtacatGTACCGTGTCATGTCATCAGTATGTTTGAGGATCTCACGAAACAAACAGTTCTGATATTAACATATGGACCCGTATCATATGATGGTCTGATCCTGTGTTGTCGTGGTATGTTGTGTACCTGTAGGGAGGCACTGGGGTTGTtgctgaggagagagaaggatcCCACTCTGGATTTATACTTGTTCTTCTTGGTCCCCGACTGGCCTAGGTGTCTCCTGGCCcgctctgtctggaggaacaacattcCCGTGGGATCATTTAGAAACTAGAAGGGGATACTCTATGttacacaggaggctggtgaagggaggagagctcataataatgactggagATGACTGGAGATGTAACGGTATCAAAAAACATGGAAACCGTGTTTGATGcggttccatttattccatcccaggcattacaatgagcccctcctatttacaatgacaccaGCCATCACTGGTGTGTTAGCACACCAAGTGCTTCACGAAAGCAACtcgggataaaaaaaaaaactccagtgCACCTTCGCATTCTTGCTTACTCCACTGTTTCTAAGGGATCGCAAAAAATGACAACACAACAGCCCCATTGGATCTTTTGagacctctccctcctgtctacatctatctcccctccctccctccttccctttctccagTCTTACCTGAACTTTGATGAGTGTGTTGGGGAAACCCTTGGCTGAGAAGGACCCAGGAAGAAGGGAGTTCCTCCCCAactgtctcttctgtctgtccAATAGCACATCCGATGGCAAGTCGTCACCTAGCCACATCTTTTAAGACATAAATGAAGCATTCATTACATTCGTAATGAACTTGGAGCAATTTTAGAGGGCTGAAAAGCATAATATGCATGCACTGCCCTTACAGGAGAAACAACTTGAATTTCACGTGATAATGGGACCgcatgtgaagttaatgtgaagttaatgtgatatcGTGACATGTAAAAGCAACACGTGACACGCGATAACACGAAACTACACGTGAAATAAACGTGACAACATGAGTTTTTCACGTCTTTATTTCACGTCAAAATGCAATTCCACATGAGAGTTTGATTTTGACATGTGAACATTTCTGCTCAACTTGTGAAATCGGCTAAATGCAATTTTTGCATGTGTCACTGCAAATTATACATGTTTTTTTATGTAAGGGCTCCCGactggcgcagcagtctaaggcactgcatctcagtgctagaggcattactacagaccctggattccgggctgtatcacaaccggccgtgatcgggagtcccatagggcggcgcataattAGTGTTTGGCCGGGATTGACCGTCATTGTAGAATaggaatttgttctaaactgacttgcctagttaaataatacaAGTAAATGTGGGTTTTAAGGTGAGTGGTACGCTGTTCAGCTAAAATAGTGTAAAAAATCTTTAATGAATGACAATATGATTACATTTGACATGATCACTTAGTACTGACTTTTCAATATGACCCCACCTGGGacttgaactcacaacctctggaGTTGGGATACGCTGAGCTCTCTGCTGTGCCAGTCTAGCATTCCTCTACATCCGCATTACCTACAATACATCTCTGCACTTAGCAAAAGAGTGCCATCTGCACTTCTATTTCAGTTATCAGTTAATCAAACCATTCTGCCATTGATTTAATTGACTTATTTCAGCTATTTAAAGGTTTTCTGAATAGTTGTCTGCTGTTTGTGCACGatattattctgttttaatgttactcctgaattACTATGATAACTATAATAGTTTTTCTTGAGTGTATTTGAAACAAAGCTGAGGTTATACCTAAGTCCAAAGTGCAGGAATACCGGTGAAATCAGTCATTGACACAGATATGGCGGCGTAGCAGGAAGATCGGAATGCCACGAAACTAGAGGTTGTGGTTCATGTATGTCAACGTGTGTTAAATATGTCAATTGCAAACCCTACGTTAAAAGcactgttttgtgtgtgtgtgtgtatcctaatTACACTTTTTTTGTTTTCATGGCATCATCTGTGAAATATCATGTGAAAAATATTCCCACGTGAAACTTCATGTGCAAAACGTGGAAATTTCACAGGTGAAATCGTGGTTTTTCCCGTAAGGGTGTGACTTCTGCAATACAGTAGTGTTGTATAACTATGGACAGTTACAGTAGACCAATTGGTTGTAGTGTATTACAGTTGTTGGTAGTCTTTATATAAATGCTTACACCAAGTGCAGAGAATGCCCCAAGTTGTCCTCGCTGTTGGGCACAAGAAAGCTATTTCATTAAAATCATTCATGCAGTTTGGGAAAAATGAAACGCCTTCCGCAAATGTACTTGTATTAAGTGCAGCCAAAGACATCTGCCTAGAGTCAGAGCATCAGACAGATGTCTTATCTATTGAATCCAcatgcatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatgaatTTGTTGAATTGATATTTAATATTAATAGTCAATATCTTAGGACAACAAGCATTTTAGTTGCATTGATCTTAGTGTTTCATTGGAATCAAATGCCTCCAGGGAGGTTATCATTACACAGCCATATGTCATGCATACGACCAACCCAGAGTGGGAAGTAATCCAGTACAAGGTGGGATCCCTCTGTGATAGAGAACAGGCTGTGGTAGGATGTCTTTGTGGGGGGAGAGGCTCATATACCTGTGGCTGTTTCTGGTTATGGGTCTTTCTTGCAGCAGATGGCTTCAGGCGCACAAGCCCTTCTTTCCTCCGGTGGTCTGCCCGCTGACACAGTTCTTTTCCTGTGATGTCCCAGTACAGTCTGCACCATGTGTGAGCTGGGGCAAGCTGCCCTGCAGGCAGAGAAAACTTAGGCACACCCAAAGAGCAACCTCCATGATGGTCCAGGCACTGGGGCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1105517 False 1573 lncRNA 0.40 2 34516457 34518178
TU1105518 False 1280 lncRNA 0.39 2 34516457 34517772
TU1105519 False 1270 lncRNA 0.39 2 34516457 34517772
TU1105522 False 954 lncRNA 0.33 2 34516457 34517446
TU1105525 False 1084 lncRNA 0.39 4 34516457 34522340
TU1105524 True 3053 TUCP 0.43 2 34517826 34522340

Neighbor

gene id symbol gene type direction distance location
acad11 acad11 coding upstream 1120 34449722 ~ 34515337 (+)
LOC110535606 LOC106578642 coding upstream 85658 34428058 ~ 34430799 (+)
LOC110535604 LOC106578639 coding upstream 88900 34183839 ~ 34427557 (+)
LOC110535603 LOC106578637 coding upstream 338727 34175502 ~ 34177730 (+)
LOC110535601 LOC106590111 coding upstream 361579 33908713 ~ 34154878 (+)
LOC110535611 LOC106578646 coding downstream 37001 34559341 ~ 34713016 (+)
trnar-ccg-2 NA coding downstream 207256 34729596 ~ 34729668 (+)
trnar-ccg-3 NA coding downstream 208717 34731057 ~ 34731129 (+)
trnar-ccg-4 NA coding downstream 210184 34732524 ~ 34732596 (+)
trnar-ccg-5 NA coding downstream 211651 34733991 ~ 34734063 (+)
G970414 NA non-coding upstream 173822 34342269 ~ 34342635 (+)
G970340 NA non-coding upstream 269776 34246324 ~ 34246681 (+)
G970335 NA non-coding upstream 276562 34239686 ~ 34239895 (+)
G970323 NA non-coding upstream 288249 34227689 ~ 34228208 (+)
G970303 NA non-coding upstream 323257 34192616 ~ 34193200 (+)
G970497 NA non-coding downstream 9746 34532086 ~ 34534246 (+)
G970534 NA non-coding downstream 66193 34588533 ~ 34588809 (+)
G970536 NA non-coding downstream 68333 34590673 ~ 34590879 (+)
G970549 NA non-coding downstream 86137 34608477 ~ 34608714 (+)
G970552 NA non-coding downstream 91217 34613557 ~ 34613761 (+)
G970283 NA other upstream 336409 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 345470 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 721396 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 911647 33604513 ~ 33604810 (+)
G969455 LOC106578609 other upstream 912783 33603047 ~ 33603674 (+)
G972725 NA other downstream 1727633 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 3019756 37542062 ~ 37543202 (+)
G973918 NA other downstream 3128798 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 3309181 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 3498109 37866715 ~ 38045713 (+)

Expression


Co-expression Network