G970534


Basic Information

Item Value
gene id G970534
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34588533 ~ 34588809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1105578
gcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgtttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1105578 True 277 lncRNA 0.42 1 34588533 34588809

Neighbor

gene id symbol gene type direction distance location
acad11 acad11 coding upstream 73196 34449722 ~ 34515337 (+)
LOC110535606 LOC106578642 coding upstream 157734 34428058 ~ 34430799 (+)
LOC110535604 LOC106578639 coding upstream 160976 34183839 ~ 34427557 (+)
LOC110535603 LOC106578637 coding upstream 410803 34175502 ~ 34177730 (+)
LOC110535601 LOC106590111 coding upstream 433655 33908713 ~ 34154878 (+)
trnar-ccg-2 NA coding downstream 140787 34729596 ~ 34729668 (+)
trnar-ccg-3 NA coding downstream 142248 34731057 ~ 34731129 (+)
trnar-ccg-4 NA coding downstream 143715 34732524 ~ 34732596 (+)
trnar-ccg-5 NA coding downstream 145182 34733991 ~ 34734063 (+)
trnar-ccg-6 NA coding downstream 146667 34735476 ~ 34735548 (+)
G970497 NA non-coding upstream 54287 34532086 ~ 34534246 (+)
G970489 LOC106578645 non-coding upstream 66193 34516457 ~ 34522340 (+)
G970414 NA non-coding upstream 245898 34342269 ~ 34342635 (+)
G970340 NA non-coding upstream 341852 34246324 ~ 34246681 (+)
G970335 NA non-coding upstream 348638 34239686 ~ 34239895 (+)
G970536 NA non-coding downstream 1864 34590673 ~ 34590879 (+)
G970549 NA non-coding downstream 19668 34608477 ~ 34608714 (+)
G970552 NA non-coding downstream 24748 34613557 ~ 34613761 (+)
G970557 NA non-coding downstream 30186 34618995 ~ 34619259 (+)
LOC110535611 LOC106578646 non-coding downstream 121893 34559341 ~ 34713016 (+)
G970283 NA other upstream 408485 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 417546 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 793472 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 983723 33604513 ~ 33604810 (+)
G972725 NA other downstream 1661164 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 2953287 37542062 ~ 37543202 (+)
G973918 NA other downstream 3062329 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 3242712 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 3431640 37866715 ~ 38045713 (+)

Expression


Co-expression Network