XLOC_028739 (BX855618.1)


Basic Information

Item Value
gene id XLOC_028739
gene name BX855618.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20037521 ~ 20039635 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055711
GTTTTATTCACAATCACTCTGTTCAGTAAATCGGTTCTGCTGTTTGATCAACAACATGATTTCTGTTTGGATTTTAAGTTCTCTGATCCTCAGCTACACTTTTGGGCGTCCCATTTTCAATAACACAAGTGGCTTGAATATGGAAACTTCTACCAATGCTACAGAGAGGAACTCCACAAACAGCACGTCTCTGATTCTTAACAATACTTCTGGTTTTCCCAATACCAGTAACAAAAGAAATGATATGTTTCCGGGTCCCGGTTATATTGGATTCTGCTGGTTACCATCCTGTGCTTTGCATAATTTGGTTGACAGAATGCAGTCCGGGGATGAGACGGCAGGGAAAATTACAGAAGACGCATTGGGaccaggaaaaaaataataatttaaagaaatgttacAGAAGAagtattacttttatttgatagtttATTTTGCTTCTAAAAATCCCTTTTCTTTTAACATTGCTTCTATAttcaaaagcattttattttaacttgaCATATGTTGATGTGTAAAGAGCACATGTATGTAGAAATATGTGTTATCAACACTTAGCTTGACAGAATGTTTAATTTCAACACCAAATacagcaataatatatatatatatatatatatatatatatatatatatatttccttctGTTTTAAAAGACATTTCATTGATAATCGAGAATCATGCTGTTTCTTCAATCAAAAATTCAATCTAAAGcttttcttaaaaacatttaaagctaTGTACACTAAAGATCtatgaaaatacagtaaaaagtcATTGTGACAACTACAAATACTTAGCTGCAGTTGCATATGATTACCAGAAGAGGGTAATCTATTATTAGAGTTCAAACATGAACAATACCCACGTTTAATTATTTGTCCATGTGTAGCGACGTATTCAATAAGGCTCTTTGCCAGCATGTTAGTGCTTGACTTTATTGCTGATGCCCTCTAAGTACGGGCACAGCTGGCACTAGAGGACATTTCACCACTTTACGTGGACACAAACATTGTGCAACTGTGTCAATATCCTAGTTGTCAGGTTTATGACACCAtataaaaatgtgcaaataatcaAACATCGTCAAACATATCTGCTCCGACATAACAGCGTCAACTTTTAAAGCTTTTTCCACCTCAGAGGTAAAGGTAAAACAATCAaagattgtatgttttttttccattatcTCACTAcagacatcatttaaaaaaacaaaaaacaaaactgtttgaCTTTAAAGCTGCAGGTTAATTttaatgttgctgttttttatgCCCAtacagtttgtttattttttcactatAAAGCACTTTGTCAGCCTTGTGGCAGCTGGAAACGTGCTATAGCCTATAAATAAATGGAACTTGAACTTCAACTAATTTTTAAGGTGGTGTCATGATTCTCCTTAGTGCATCCATCCAATATTATTAACAAATTACTTTCAGCGGACCATGACCA
>TCONS_00058197
CTGATTCTTAACAATACTTCTGGTTTTCCCAATACCAGTAACAAAAGAAATGATATGTTTCCGGGTCCCGGTTATATTGGAATGCAGTCCGGGGATGAGACGGCAGGGAAAATTACAGAAGACGCATTGGGaccaggaaaaaaataataatttaaagaaatgttacAGAAGAagtattacttttatttgatagtttATTTTGCTTCTAAAAATCCCTTTTCTTTTAACATTGCTTCTATAttcaaaagcattttattttaacttgaCATATGTTGATGTGTAAAGAGCACATGTATGTAGAAATATGTGTTATCAACACTTAGCTTGACAGAATGTTTAATTTCAAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000106138

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055711 False 1461 mRNA 0.34 5 20037521 20039635
TCONS_00058197 True 347 lncRNA 0.32 3 20038400 20039284

Neighbor

gene id symbol gene type direction distance location
XLOC_028738 drd4-rs coding downstream 9950 19946294 ~ 20027571 (-)
XLOC_028737 BX323820.1 coding downstream 116111 19903784 ~ 19921410 (-)
XLOC_028736 NA coding downstream 136388 19900015 ~ 19901133 (-)
XLOC_028735 cacna2d1a coding downstream 153081 19768679 ~ 19884440 (-)
XLOC_028734 hgfa coding downstream 295218 19710657 ~ 19742303 (-)
XLOC_028740 zgc:193726 coding upstream 3172 20042807 ~ 20043484 (-)
XLOC_028741 NA coding upstream 5232 20044867 ~ 20047884 (-)
XLOC_028742 atp6v1f coding upstream 9625 20049260 ~ 20063234 (-)
XLOC_028743 dennd6b coding upstream 31493 20071128 ~ 20081621 (-)
XLOC_028744 fam3c coding upstream 62357 20101992 ~ 20108833 (-)
XLOC_028733 NA non-coding downstream 498431 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 667736 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 non-coding downstream 989966 19047466 ~ 19047555 (-)
XLOC_028722 NA non-coding downstream 1322595 18712763 ~ 18714926 (-)
XLOC_028746 NA non-coding upstream 83278 20122913 ~ 20124058 (-)
XLOC_028756 BX248410.1 non-coding upstream 356414 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1552609 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1594377 21634012 ~ 21647992 (-)

Expression


Co-expression Network