XLOC_002874 (kctd7)


Basic Information

Item Value
gene id XLOC_002874
gene name kctd7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 32881586 ~ 32890617 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005319
CTCACATCCACCTGACAGGCCGACAGACCACACCTCTCGCTCGGGGTGCGCTGTGCAACCCAGCCGCCTTTCTGGACATCAAAACAGTCGCTGACAGTGTGGGCCTTCATCTCCACCATCACCGAGCCTGCTGTCGGGTGTGTGCATGCAGCATAATGGAGCAGGAGAAACCCCGAACGGAGAACCGCCTCCGCTTTCCTTTAGCGCTGCAGCTCCGCTCCAAATGGCAACATCACGGGTGAGGAGGTTCGCGCAGGAGGGGCGGACGGTCCCTCAGCCCAGAGTGATGGTGGTGTTTTCGGCTGCGAGTGACTCTGAGAAACCGGGGGATGCGATGTCGGGTGCGGACAAAGGAGAAGAGGAGTACCGCAAACCAGCCATTCCTGTCGCTAACCTGAATCTAGCCAAATCCCTTCGCACTTTAGACGCACCTGAGGAGTTTCCTGAGGTCATCCCCTTGAATGTAGGAGGAACATATTTCACCACTCGCCTGTCCACCCTGCGACGTTATGAGGACACTATGTTGGCCGCCATGTTTAGTGGCCGCCACCACATTCCCCGAGATGCAGAGGGACGATATTTCATCGACCGGGACGGAACATATTTTGGGGATATTTTGAATTTCTTGCGCGAGGGTGAGCTGCCTCAGAGGGACCGTGTTCGTGCCGTGCACAGGGAAGCTCAATATTATGCTATTGGACCTCTTTTGGAAAACCTGGAAGACACACAGCCTCTCACTGGAGAGAAAGTGCGACAAGCTTTTCTTGATCTCTTGCCCTATTATAAAGAAAATCTCGAGCGCATCGTGGAGATCGCGAAACTCCGTGCCATGCAGCGGAAGGCACGCTTTGCGAAACTGAAGATCTGTGTGTACAAGGAAGAGATGCCCATCACCCCTTATGAAAGACCGCTGTTCAACTCATTGCGTTTTGAGCGCTCGGAGAGTGAGGCCAAGCTGTTTGAGCACCATTGTGAGGTCGACGTGTCCTTCGGGCCCTGGGAGGCAGTGGCGGATGTTTATGACCTTCTGCACTGCATAGTAAGCGATCTGGCAGAGCGGGGAATCTCTGCTGACCAGCAATGCATCGGCGTGTGCGACAAACACCTCATCAACCACTACTATTGTAAAAGGCCCATCTATGAGTTTAAAATCACCTGGTGGTGAAGGTGAGGTGTTTCATCAGGAACAGAAAGGGATGTTTGCTGTGGTCTACATGAAACCAGCAGGACTCACAACGAGTGGAAGAAACTACAAGCTTCTGAATAAGATGGCTGTTATTATTGCTGTTGCTGTGGTTTGCAACCCCAAATTTCCTTTATGGGCAGCTctattgattttttgtttttgtttaccttCCTTGTTCCTTTAGAATAAACCCGAAATTGTTTAATTCAGTTGTAGATCTACAGGGGTTTTCTGGAACGTCCTCAGAGGAAGTGAACTGATGTgaaacagtgtttttttaattattattattattatgacatcTCTGCAAAGTATGTTTTTGTGTTAGATGTATTGAATGTATTAACAGTTCGATCAAGACTCAATCAACTGCACTCCTAATGGGAAATCGGAAATTTGTCATTGCTTGTGATGCATTTCTTCAGAAGGAAACCTTTCTCCTCTTCAGTATTTTTGATATTGTTTTActccatttgttttatttatatacgTTGGACCTGATCTGTGTTATGTTGCCAATAATGAGCATTATAGATCACGCAATCTAAGCAGAAGCTGACTTAATTTAGAATACAAAGGTCTAGCATTTATAGCCACCCAAAGCTTCACATAAAGCCTTCAGAAAAAACAACACACCCCTAGACAagcattacatttattttttaatttaaaaacacttttgtttttagaataagcTTTTAGATTGAATATAAAATGTCCTAAATATgagtacatttaattaaaacgatACTATACAAAGACTGTTAGCCAACTTTCTGCAGGTTAAATAGCCTATTTTGCTACTTTGACACTTTATGAAATTATTTTCTGCTGCCAAATGCATTTGTTCATGCTTGCCATAACCCTCAACGattgcattatttgttatttcatCCATCTGAAACCTCTATTCGTTTCGGTCTGAGAGCTGTGAAGGCCACACGAAGTTGCATGAGCTCTCTTGTGTTTTGGCAGCAGAATATGTCACAGCCATGCTTCTGATAATCCTAACTGAGCTCAACTTTGTTGCTCAATCCGATGCATATTTGTTCTGTTGTACATTTGATGAAGACAGTTTGTATTGCATTATTGTACTGGCTCTTATTGTGCTGATAATAAACCATATATTTTGCAATCTATAAAAA

Function

symbol description
kctd7 Predicted to be involved in membrane hyperpolarization and positive regulation of transporter activity. Predicted to act upstream of or within protein homooligomerization. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7).

GO:

id name namespace
GO:0060081 membrane hyperpolarization biological_process
GO:0032411 positive regulation of transporter activity biological_process
GO:0051260 protein homooligomerization biological_process
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060804-2 Predicted to be involved in membrane hyperpolarization and positive regulation of transporter activity. Predicted to act upstream of or within protein homooligomerization. Predicted to be located in cytosol and membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 3. Orthologous to human KCTD7 (potassium channel tetramerization domain containing 7).

Ensembl:

ensembl_id ENSDARG00000061580

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005319 True 2331 mRNA 0.45 4 32881586 32890617

Neighbor

gene id symbol gene type direction distance location
XLOC_002873 rabgef1 coding downstream 1288 32854901 ~ 32880298 (-)
XLOC_002872 trim37 coding downstream 29739 32809620 ~ 32851847 (-)
XLOC_002871 NA coding downstream 101296 32779880 ~ 32780290 (-)
XLOC_002870 NA coding downstream 203341 32676810 ~ 32678245 (-)
XLOC_002869 atg101 coding downstream 217827 32657496 ~ 32663759 (-)
XLOC_002875 NA coding upstream 4380 32894997 ~ 32896944 (-)
XLOC_002876 cux1a coding upstream 7916 32898533 ~ 33156789 (-)
XLOC_002877 NA coding upstream 267972 33158589 ~ 33164573 (-)
XLOC_002878 bcl7ba coding upstream 349793 33240410 ~ 33251876 (-)
XLOC_002879 tbl2 coding upstream 363335 33253952 ~ 33265566 (-)
XLOC_002867 NA non-coding downstream 290124 32584685 ~ 32591462 (-)
XLOC_002863 NA non-coding downstream 630740 32216413 ~ 32250846 (-)
XLOC_002862 NA non-coding downstream 796962 32077811 ~ 32084624 (-)
XLOC_002883 dre-mir-454a non-coding upstream 486201 33376818 ~ 33376941 (-)
XLOC_002884 dre-mir-301a non-coding upstream 486384 33377001 ~ 33377086 (-)
XLOC_002885 dre-mir-130a non-coding upstream 486513 33377130 ~ 33377214 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_15891065_15894363 KCTD7 coding CI01000304 null 15890803 ~ 15894363 (-)