G971896


Basic Information

Item Value
gene id G971896
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35441876 ~ 35443460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1107064
GATTTTTGACATTGAATTTTATtgtttcattctttctttctttcttgtctAGCCCTGATTCATAGCATGATGTTGATTCATTCAGCACACTGTAGCACAGGGCTAGGTATCGCAGTGCATACAATTAGATGACCCCAATCCCAATCTATCCTTCAGCTGCACAGAAGATTGAAACGACCTGACAGAGTAGCACCTTTTAGTAGAGGGAATCTAACGCTAACTACCAGTCCATTACCAACAAGGACAATGGATCCCGAACACAGATTTTTAAAACATAAAAGAACAAAACAGTGACTAACTGAAGACTGTGAGTGCTCAGATATAAATGTATTATCTCGTATCTTCTCTGCGTGTCTCCTATGTTGGCTTGAACTTTCAAAAAGAGAGCGCTTTTCTGCAaagattcaaccttgtttttaaGATGTACActtgtaaatacatttgactgagcTCTTGGTAAACATGAAAACAACATGGAGAGAACATTAGAGCTGagcaaagcaacaacaaaaacatttgtttAGTCTAAGCTACACCTAAAGCACTAATAACATTCAATACAAGTGTTTTACTGTTAAAAACCATAGAATTGCCAACCATGTGATATGTGAATAAATTAAGTAACTCTTCAAATGATCCGATCTGTGCATAAAATAACCTAACGGTGGCGTTTCACATTTCATTGTTTACAGATAAAGTACAACGCGCAGACTCCGAGGAAGCAGCATATTTATTGTCGAGGTATAATACGTCTATGCAGAACTTGTTCTCTTTTTTTTTGAGCTTCTGTCTAGTCATTGTTGCAACATGCTATTTATGTATAAAATCACTGTGGTGGAAAACGTTTAAAAATGcttaaaaaatgtatttccaaTTTAAAAGAAAAAAACCCCAGCTCAGGAGCCTCATCCCTCCTTTCATACATGTCACCCGTCCCTGGTTCCCTCGAACTCCCTGTGTGTTGCAGAGGTTTAGGACAGCATGATGTGGCCATGCTGGCTAGTGGattcagtgctctctctctctctagggatCTAGCTATCTGCACTGGGACAGTGTTCCAGTTTTGCGATGATTATTCAAGCTATAGATTGTACTTATTCCTTTTTCCATATTAATGACTATTCCGCTGACTACTCCTGTTCTGTAATGATTCTTCTGGTTGACTGATGTCTGTTGTGGATGATTCTGATGAAGGTTATTCCTGTTGGGTAATGATTTATCTTGTATTTAATCCAGTTGGGTTATTGCGGTGAATGACAAAATCCTGTTTCCACGATTATTACTTGGTTAATCCCGTTATGTCTGACTCTCCCGGTCGCTTGCGTTGCAGTGTGGAGAACTTCCAAAACGAACGCCAGGTGCTGGACTGTGAGGCGGCTCTACTCATCCTTCTCCACTATGATCTCCCCAAGAAGCACCTTTCTCCTCTGACGGAGCATGTGGAAAAAGAGCTGTGGGAAca

Function

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1107064 True 1465 lncRNA 0.40 2 35441876 35443460

Neighbor

gene id symbol gene type direction distance location
LOC110535008 LOC106578723 coding downstream 17232 35417475 ~ 35428560 (-)
LOC110535617 LOC106578706 coding downstream 86450 35225765 ~ 35355426 (-)
LOC110535616 LOC106578707 coding downstream 462923 34810223 ~ 34978953 (-)
LOC110536615 NA coding downstream 906754 34533287 ~ 34535122 (-)
LOC110535610 LOC106578645 coding downstream 919445 34516455 ~ 34522431 (-)
LOC110535009 LOC106578704 coding upstream 639 35444099 ~ 35492990 (-)
enosf1 enosf1 coding upstream 84665 35528125 ~ 35533382 (-)
LOC110535621 LOC106578703 coding upstream 90667 35534127 ~ 35584736 (-)
LOC110535624 LOC106578699 coding upstream 450671 35894131 ~ 35932284 (-)
LOC110535626 LOC106578695 coding upstream 513818 35957278 ~ 36001125 (-)
G971736 NA non-coding downstream 91477 35350141 ~ 35350399 (-)
G971683 NA non-coding downstream 155840 35271211 ~ 35286036 (-)
G971655 NA non-coding downstream 212544 35228635 ~ 35229332 (-)
G971249 NA non-coding downstream 443523 34998143 ~ 34998353 (-)
G972007 NA non-coding upstream 163478 35606938 ~ 35621950 (-)
G972023 NA non-coding upstream 184407 35627867 ~ 35628095 (-)
G972029 NA non-coding upstream 193980 35637440 ~ 35638192 (-)
G972067 NA non-coding upstream 231220 35674680 ~ 35674952 (-)
G972077 NA non-coding upstream 236232 35679692 ~ 35680086 (-)
G971137 NA other downstream 602950 34836972 ~ 34838926 (-)
G970066 NA other downstream 1566604 33874814 ~ 33875272 (-)
G968868 NA other downstream 2774386 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 2892290 32489195 ~ 32549643 (-)
G972383 LOC106578698 other upstream 429209 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 1770424 37213884 ~ 37214896 (-)
G974756 NA other upstream 1970918 37414378 ~ 37415635 (-)
LOC110535661 LOC106578659 other upstream 2296415 37735411 ~ 37809752 (-)
G975103 LOC106578726 other upstream 2597946 38041406 ~ 38045662 (-)

Expression


Co-expression Network