XLOC_028741


Basic Information

Item Value
gene id XLOC_028741
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20044867 ~ 20047884 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058198
TGATTCATTGATTCTTCGGTGGCTTTTACACCGTCGCTGTCAGATCCTGAATATTTTAGGGAACATTGGTCACATCTATCTTGTCCATTATTTAAACTGTCTTATCTAAGGACAAAACCTACTCTTACCTGTGGGAATCACACATCATACATACAGATTCCTGGTAGATTAAAGAGCATTTAAATGGAAAGAGGATGAAATATAAGCTCAAATCAACTTTGTTCTGCTTCATTCACAATCACTCTGTTCAGTAAATCGGTTCTGCTGTTTGATCAACAACATGATTTCTGTTTGGATTTTAAGTTCTCTGATCCTCAGCTACACTTTTGGGGGTCCCATCTTCAAGAACATAAGGTCTGTAAGGCCTTCAAAATTCTTGCGAAGGTGTTTTCTGTCCACTTGTGCCTTGTGGAACCTAGGGGCATTGTTACAGACTGGAAATGAGGTTGCAGGGGACTTTACCAATGATCCATTGGGATTTGGCAAAAAATGATGCATGGTTCTGAATGTTCAAAGAATGTGTAATCAAGCTTTTGATTAAATATATGAGGATGTTGCACTAATAATGAATCACAATGAAACTGTTTTACTTAATTGTCAACTTTTATGTGctgtaatacaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcactttttAACCGTACTTTTATGATATTTCCGTTTTCCCTTGGATGAAATCCAGCCGTTTATTTCTATCCACTCCAGCAAATTTCAGTAAAACTGtctgtttgatttttttgtatgCTCATATTTTTGTTACTGATTGATAAGAATGATAAAATGTACACTATTCCATTTGTAGATTCTGTACACCTAAGAGAATGAAAAGAGAG
>TCONS_00058200
CTTTATTTAATGTCTAATACATTAAAAGCAAGAACATAAAACTTTGTCTAGCCacctttttaaaacctttaattgaacatgaaataaaatacaacatattttgcGCTCTACAGAATTTTCAGACTCCTCCGTTCCATCAGCCAATCACTGTCTGGATAGTTAGTAATCATGCTGACATAGCAATGAGGTCCATGCTCTCACTCTTAGCTTAAAAGGTCTCAGCAGCTGtcaacacattttaatattacatgTCATTTTTACTGCTATTTAGGAGGTAAGAAATAATTGTGCCTACGAGCTCAGGTATATCATCATGCTGGCAACAAACACACATGATGTTGGTTGTATAAACTGCTTTGTTTGTTGCAGGTTCCTGAAAATCCTGTGTATCATCACTGACTGTACACTCACACTATGGAAGTCTAACAGAAATCTGACTACTAATATATCTCAGTCAAACACTTAACAATGATGAGAGCAAGTGATTCATTGATTCTTCGGTGGCTTTTACACCGTCGCTGTCAGATCCTGAATATTTTAGGGAACATTGGTCACATCTATCTTGTCCATTATTTAAACTGTCTTATCTAAGGACAAAACCTACTCTTACCTGTGGGAATCACACATCATACATACAGATTCCTGGTAGATTAAAGAGCATTTAAATGGAAAGAGGATGAAATATAAGCTCAAATCAACTTTGTTCTGCTTCATTCACAATCACTCTGTTCAGTAAATCGGTTCTGCTGTTTGATCAACAACATGATTTCTGTTTGGATTTTAAGTTCTCTGATCCTCAGCTACACTTTTGGGGGTCCCATCTTCAAGAACATAAGcagTGGCTCGAATATGGAGATTTCTCCCAATGCTACAAAGAGCAACTTAACAGAGTTTACTACTCCGacaaacatGTCTGTAAGGCCTTCAAAATTCTTGCGAAGGTGTTTTCTGTCCACTTGTGCCTTGTGGAACCTAGGGGCATTGTTACAGACTGGAAATGAGGTTGCAGGGGACTTTACCAATGATCCATTGGGATTTGGCAAAAAATGATGCATGGTTCTGAATGTTCAAAGAATGTGTAATCAAGCTTTTGATTAAATATATGAGGATGTTGCACTAATAATGAATCACAATGAAACTGTTTTACTTAATTGTCAACTTTTATGTGctgtaatacaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcactttttAACCGTACTTTTATGATATTTCCGTTTTCCCTTGGATGAAATCCAGCCGTTTATTTCTATCCACTCCAGCAAATTTCAGTAAAACTGtctgtttgatttttttgtatgCTCATATTTTTGTTACTGATTGATAAGAATGATAAAATGTACACTATTCCATTTGTAGATTCTGTACACCTAAGAGAATGAAAAGAGAG
>TCONS_00058199
CTTTATTTAATGTCTAATACATTAAAAGCAAGAACATAAAACTTTGTCTAGCCacctttttaaaacctttaattgaacatgaaataaaatacaacatattttgcGCTCTACAGAATTTTCAGACTCCTCCGTTCCATCAGCCAATCACTGTCTGGATAGTTAGTAATCATGCTGACATAGCAATGAGGTCCATGCTCTCACTCTTAGCTTAAAAGGTCTCAGCAGCTGtcaacacattttaatattacatgTCATTTTTACTGCTATTTAGGAGGTAAGAAATAATTGTGCCTACGAGCTCAGGTATATCATCATGCTGGCAACAAACACACATGATGTTGGTTGTATAAACTGCTTTGTTTGTTGCAGGTTCCTGAAAATCCTGTGTATCATCACTGACTGTACACTCACACTATGGAAGTCTAACAGAAATCTGACTACTAATATATCTCAGTCAAACACTTAACAATGATGAGAGCAAGTGATTCATTGATTCTTCGGTGGCTTTTACACCGTCGCTGTCAGATCCTGAATATTTTAGGGAACATTGGTCACATCTATCTTGTCCATTATTTAAACTGTCTTATCTAAGGACAAAACCTACTCTTACCTGTGGGAATCACACATCATACATACAGATTCCTGGTAGATTAAAGAGCATTTAAATGGAAAGAGGATGAAATATAAGCTCAAATCAACTTTGTTCTGCTTCATTCACAATCACTCTGTTCAGTAAATCGGTTCTGCTGTTTGATCAACAACATGATTTCTGTTTGGATTTTAAGTTCTCTGATCCTCAGCTACACTTTTGGGGGTCCCATCTTCAAGAACATAAGTGGCTCGAATATGGAGATTTCTCCCAATGCTACAAAGAGCAACTTAACAGAGTTTACTACTCCGacaaacatGTCTGTAAGGCCTTCAAAATTCTTGCGAAGGTGTTTTCTGTCCACTTGTGCCTTGTGGAACCTAGGGGCATTGTTACAGACTGGAAATGAGGTTGCAGGGGACTTTACCAATGATCCATTGGGATTTGGCAAAAAATGATGCATGGTTCTGAATGTTCAAAGAATGTGTAATCAAGCTTTTGATTAAATATATGAGGATGTTGCACTAATAATGAATCACAATGAAACTGTTTTACTTAATTGTCAACTTTTATGTGctgtaatacaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcactttttAACCGTACTTTTATGATATTTCCGTTTTCCCTTGGATGAAATCCAGCCGTTTATTTCTATCCACTCCAGCAAATTTCAGTAAAACTGtctgtttgatttttttgtatgCTCATATTTTTGTTACTGATTGATAAGAATGATAAAATGTACACTATTCCATTTGTAGATTCTGTACACCTAAGAGAATGAAAAGAGAG

Function

GO:

id name namespace
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:1904018 positive regulation of vasculature development biological_process
GO:0045937 positive regulation of phosphate metabolic process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:0042327 positive regulation of phosphorylation biological_process
GO:0010562 positive regulation of phosphorus metabolic process biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058198 False 889 lncRNA 0.33 3 20044867 20047402
TCONS_00058200 False 1446 lncRNA 0.35 4 20044867 20047884
TCONS_00058199 True 1443 lncRNA 0.34 4 20044867 20047884

Neighbor

gene id symbol gene type direction distance location
XLOC_028740 zgc:193726 coding downstream 1383 20042807 ~ 20043484 (-)
XLOC_028739 BX855618.1 coding downstream 5232 20037521 ~ 20039635 (-)
XLOC_028738 drd4-rs coding downstream 17296 19946294 ~ 20027571 (-)
XLOC_028737 BX323820.1 coding downstream 123457 19903784 ~ 19921410 (-)
XLOC_028736 NA coding downstream 143734 19900015 ~ 19901133 (-)
XLOC_028742 atp6v1f coding upstream 1376 20049260 ~ 20063234 (-)
XLOC_028743 dennd6b coding upstream 23244 20071128 ~ 20081621 (-)
XLOC_028744 fam3c coding upstream 54108 20101992 ~ 20108833 (-)
XLOC_028745 si:dkey-159a18.1 coding upstream 63037 20110921 ~ 20118468 (-)
XLOC_028746 NA coding upstream 75029 20122913 ~ 20124058 (-)
XLOC_028733 NA non-coding downstream 505777 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 675082 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 non-coding downstream 997312 19047466 ~ 19047555 (-)
XLOC_028722 NA non-coding downstream 1329941 18712763 ~ 18714926 (-)
XLOC_028756 BX248410.1 non-coding upstream 348165 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1544360 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1586128 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1608361 21656245 ~ 21657106 (-)

Expression


Co-expression Network