XLOC_028742 (atp6v1f)


Basic Information

Item Value
gene id XLOC_028742
gene name atp6v1f
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20049260 ~ 20063234 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055713
GATTAAAGCATATGATCCTGCTGAACGGAAAACATTTCGTCCATTCTGCGTCTTTTATTTGAGCAAAATATAAGACAAAGTCACGATGCCCGGACGAGGAAAATTAATCGCAGTTATCGGTGATGAAGACACGTGCACCGGATTTCTCCTCGGAGGGATCGGAGAGCTCAATAAAAACCGTAAACCCAATTTCTTGGTGGTGGAGAAGGAAACCAGCGTTACAGAGATAGAGGAGACCTTCAAGAGTTTCCTTGCTCGCAATGACATTGGCATCATCCTTATCAACCAGTTCATCGCAGAGATGATTCGACATGCCATTGATGCCCACATGCAGTCCATCCCGGCTGTGCTAGAGATTCCCTCAAAAGAGCATCCATATGATGCCTCCAAAGACTCCATCCTGCGACGGGCCAAGGGTATGTTCTCTGCAGAGGACTTCCGATAACCTGTTACTACCCATGCAGGCTCACAGTCTGGCCTGAGCAGATGAAGGAGTTGGGTATTCTCATCCATCTCGCTGAAACTGAAAAGCATATTATGAGGAGTAAATAATGATGTGTGTTTAATCAATGTTCTGTGATGTATTTTTTGCCATTCCCAAGGAAATAGTTTTTGTCAGTGCTCctactaataattattttaaaatatatgtttaatataacaatcatatatatcatatataaaaaTTCAATATATTATGAATTTCCTTTTAAATGCTGTCACTTTAATATTTAAGTTCCTGAATGTCTTTCTCAAACTTGATAATATTAGACAGAAA
>TCONS_00055714
TGATTAAAAGCTCGAGTGTATTATAAAAGCAGTGCTTCTTCATGTGAGTCTGCTGACCACCAGACTggctgaagctctttccacaTAAAGTGCAGTGATATGGTCGTTCTCCAGTGTGGACTCTTTCATGTGTAGCCAGTGATGCTCGGAGTTTCCTTGCTCGCAATGACATTGGCATCATCCTTATCAACCAGTTCATCGCAGAGATGATTCGACATGCCATTGATGCCCACATGCAGTCCATCCCGGCTGTGCTAGAGATTCCCTCAAAAGAGCATCCATATGATGCCTCCAAAGACTCCATCCTGCGACGGGCCAAGGGTATGTTCTCTGCAGAGGACTTCCGATAACCTGTTACTACCCATGCAGGCTCACAGTCTGGCCTGAGCAGATGAAGGAGTTGGGTATTCTCATCCATCTCGCTGAAACTGAAAAGCATATTATGAGGAGTAAATAATGATGTGTGTTTAATCAATGTTCTGTGATGTATTTTTTGCCATTCCCAAGGAAATAGTTTTTGTCAGTGCTCctactaataattattttaaaatatatgtttaatataacaatcatatatatcatatataaaaaTTCAATATATTATGAATTTCCTTTTAAA

Function

symbol description
atp6v1f Predicted to enable proton-transporting ATPase activity, rotational mechanism. Acts upstream of or within several processes, including Kupffer's vesicle development; notochord cell vacuolation; and regulation of heart looping. Located in plasma membrane. Is expressed in central nervous system; diencephalon; epiphysis; mucus secreting cell; and telencephalon. Orthologous to human ATP6V1F (ATPase H+ transporting V1 subunit F).

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0006811 ion transport biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:1901207 regulation of heart looping biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-259 Predicted to enable proton-transporting ATPase activity, rotational mechanism. Acts upstream of or within several processes, including Kupffer's vesicle development; notochord cell vacuolation; and regulation of heart looping. Located in plasma membrane. Is expressed in central nervous system; diencephalon; epiphysis; mucus secreting cell; and telencephalon. Orthologous to human ATP6V1F (ATPase H+ transporting V1 subunit F).

Ensembl:

ensembl_id ENSDARG00000045543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055713 False 778 mRNA 0.40 2 20049260 20051141
TCONS_00055714 True 619 processed_transcript 0.41 3 20049324 20063234

Neighbor

gene id symbol gene type direction distance location
XLOC_028741 NA coding downstream 1376 20044867 ~ 20047884 (-)
XLOC_028740 zgc:193726 coding downstream 5776 20042807 ~ 20043484 (-)
XLOC_028739 BX855618.1 coding downstream 9625 20037521 ~ 20039635 (-)
XLOC_028738 drd4-rs coding downstream 21689 19946294 ~ 20027571 (-)
XLOC_028737 BX323820.1 coding downstream 127850 19903784 ~ 19921410 (-)
XLOC_028743 dennd6b coding upstream 7894 20071128 ~ 20081621 (-)
XLOC_028744 fam3c coding upstream 38758 20101992 ~ 20108833 (-)
XLOC_028745 si:dkey-159a18.1 coding upstream 47687 20110921 ~ 20118468 (-)
XLOC_028746 NA coding upstream 59679 20122913 ~ 20124058 (-)
XLOC_028747 cep83 coding upstream 61629 20124863 ~ 20135919 (-)
XLOC_028736 NA non-coding downstream 148127 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 510170 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 679475 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 non-coding downstream 1001705 19047466 ~ 19047555 (-)
XLOC_028756 BX248410.1 non-coding upstream 332815 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1529010 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1570778 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1593011 21656245 ~ 21657106 (-)

Expression


Co-expression Network