XLOC_028744 (fam3c)


Basic Information

Item Value
gene id XLOC_028744
gene name fam3c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20101992 ~ 20108833 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055716
GTCGGGAATCGGATATTCAGCGCTGTGTCGCCGTGGCACCAGGTGTTTGGATCTTATTGTGGAGACTGGTGCCTGCTGATCCCTCAGGATGATGCGAGCAGGAGGACTTTTGAAACTGGGGGTGCTGGTTTCTGTCTTATTTGTAGCTGTGTTCCTGGCCTTTGAGCTGTTGGAGAGCAATATGAATTTTAATTTGGGAAAAGTCTTTACACGATATGCACCTCCAGATGCAGTCCCCACCAGACCACTGCGCCACAAATGCGGCCTATCAAAATCATGTCCTGAGGACCATTTTGCCTTTAAGATCACCAGTGGAGCAGCCAGTGTTGTCGGCCCAAAGATGTGTTTTCAGGACAATGTAATAATGAGCGGTGTGAAGAACAACATTGGACGCGGTATAAACATTGCTTTGCTCAATGggAAGACCGGCGAGCTCACTAAGACTGACTCATTTGACATGTGGACTGGAGATGTAAATCTTCTCATCAAATTCTTGAAGGACATAGAAGATGGAAGCATTGTCATGATGGCCACATTTGACGACCCTGCaacaaaGATGAATGACGAGGCCAGAAATTTGATAGCAGATTTGGGCAGTTCAAGCATCAGCATATTAGGCTTCCGAGATAACTGGGTGTTTGTTGGAGGCAAAGGAATCAAGACAAAGAGCccctttgagcagCACATCAAGAACAATGCAGAGACTAACAAGTATGAAGGATGGCCAGAAGTTCTGGAGATGGAAggatgcattcctataaagcatgACTGAAATcaaccttattttaaaataatttagctgTTCCTGGTGGAGTTTGAAGAAAATTGAATGAGCAATGTGTTGTTGAATTGACATTTTCAATGATGCAAGTAAGTGTAGAATATAGACTTTGAAGGACTGTATCTTATATCTTAAGGTTAGAAGTCCTGAGCATTTGCTGCtctctatttatatttattttatggggTTCCCACTCCTTTTGATCAATGCATTTCTATTACTTTTCTGTTGTACATGATCCCTAGAttgagatttttttaattaattgcaagTACAATATGTAGccagtgaaatattttaaaacttaaatataaaaaattacgtTAACCAAAGCTATTTTAGTAACTTCAAAAATTGTTGTTTTTCCACCAAtggaaaacatttctaaaatgtcATGCTTGCGGAAAACCTGATTCATAGGTActctttatttttaaagctgGTCCATAAACTGCCATTGTGCTGCCATTTGTGAACCTCCAGTGTCATAAAAAGAGATATAGGAATCAGAAGGTTTGAGTGCCTGTTGTCTTATAGTCTTTTGTACTACAAATAGAGAATTAAGGAAGAGGGTTTGTGCTCATTTTAATCATAGCACCATGACAATGTTGATCAGAATGGATTGAAGATACACGGCTTAGAGCTGTTGTTACCAAAagattgtttttacattatttattattttatgtttatcatACTGTTTCTACTGGCAAAGACAGTTTGAATGTTGAATGGTAgagaatgaagattttttttcccccactttgcatttaatttacaagattttttttgtacTAAAAAACTACTGTCTTcagtttttataataattttatttttaatagcttCAGGGAGTCTTGTTACATTTTGGTGATTTGCATTCAGAGATTTTTCGTTTGTCGTTTTATTCggccaaattttttttttttttttttttttgcattttaagagTTTGAGCAGCAGCTGTTATATGCAGTTAGTGCTGATATTAcactattataatttaatataatcttttttttattgtgctttaTGCAATATCTGTAGTATGTCCTGTATTGTGAATTTACAAAGCCAAAAGATCACCTTGTTGTTAATATTGTTAATGATTGCCTGTATGATTTTTAACTTTACTTACACTGTGAAGTTGTgcatgatacattttttttgtaagaaaACCAGCTGTGTGCCTTACTACAGTGATAATATATGCAAAGTGATTTTGTCTAGACTTTTGTGTGGAGTTGTTGATTGCACGTCATGGCCTTAATATGTATAGCTGTACTGAGGAGttctttattataaattaaatttaaatcaagtaaactTTGCATTCTGTGATTGTAGAGTCTTTCCTTAAAATACGACTCAAGCTTTTTAGGGTGTTtcgtaataaaacaaatgacttgcTTTCA

Function

symbol description
fam3c Predicted to act upstream of or within negative regulation of gluconeogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in EVL; axial chorda mesoderm; notochord; periderm; and somite. Orthologous to human FAM3C (FAM3 metabolism regulating signaling molecule C).

GO:

id name namespace
GO:0045721 negative regulation of gluconeogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6137 Predicted to act upstream of or within negative regulation of gluconeogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in EVL; axial chorda mesoderm; notochord; periderm; and somite. Orthologous to human FAM3C (FAM3 metabolism regulating signaling molecule C).

Ensembl:

ensembl_id ENSDARG00000056152

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055716 True 2193 mRNA 0.36 10 20101992 20108833

Neighbor

gene id symbol gene type direction distance location
XLOC_028743 dennd6b coding downstream 20371 20071128 ~ 20081621 (-)
XLOC_028742 atp6v1f coding downstream 38758 20049260 ~ 20063234 (-)
XLOC_028741 NA coding downstream 54108 20044867 ~ 20047884 (-)
XLOC_028740 zgc:193726 coding downstream 58508 20042807 ~ 20043484 (-)
XLOC_028739 BX855618.1 coding downstream 62357 20037521 ~ 20039635 (-)
XLOC_028745 si:dkey-159a18.1 coding upstream 2088 20110921 ~ 20118468 (-)
XLOC_028746 NA coding upstream 14080 20122913 ~ 20124058 (-)
XLOC_028747 cep83 coding upstream 16030 20124863 ~ 20135919 (-)
XLOC_028748 lrrc17 coding upstream 32358 20141191 ~ 20156085 (-)
XLOC_028749 sinup coding upstream 67310 20176143 ~ 20177868 (-)
XLOC_028736 NA non-coding downstream 200859 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 562902 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 732207 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 non-coding downstream 1054437 19047466 ~ 19047555 (-)
XLOC_028756 BX248410.1 non-coding upstream 287216 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1483411 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1525179 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1547412 21656245 ~ 21657106 (-)

Expression


Co-expression Network