G972454


Basic Information

Item Value
gene id G972454
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36018229 ~ 36018554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1107652
catgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtccacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgagatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1107652 True 326 lncRNA 0.37 1 36018229 36018554

Neighbor

gene id symbol gene type direction distance location
mlrn mlrn coding upstream 6712 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 67831 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 124438 35868265 ~ 35893791 (+)
LOC110535011 NA coding upstream 152146 35720089 ~ 35866083 (+)
adcyap1 LOC100135955 coding upstream 416621 35595222 ~ 35601608 (+)
LOC110535013 LOC105015730 coding downstream 46658 36065212 ~ 36075733 (+)
LOC110535630 LOC106578722 coding downstream 132526 36151080 ~ 36157644 (+)
LOC110535631 LOC106578690 coding downstream 146235 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 170870 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 212561 36231115 ~ 36233394 (+)
G972427 LOC106578695 non-coding upstream 44619 35973031 ~ 35973610 (+)
G972271 NA non-coding upstream 136880 35881083 ~ 35881349 (+)
G972266 NA non-coding upstream 142553 35875476 ~ 35875676 (+)
G972252 NA non-coding upstream 163523 35854401 ~ 35854706 (+)
G972455 LOC108238713 non-coding downstream 7846 36026400 ~ 36026768 (+)
G972458 NA non-coding downstream 11410 36029964 ~ 36030298 (+)
G972460 NA non-coding downstream 13596 36032150 ~ 36032396 (+)
G972462 NA non-coding downstream 17466 36036020 ~ 36036311 (+)
G972637 NA non-coding downstream 107524 36126078 ~ 36126302 (+)
G970489 LOC106578645 other upstream 1495889 34516457 ~ 34522340 (+)
G970283 NA other upstream 1838181 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1847242 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2223168 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2413419 33604513 ~ 33604810 (+)
G972725 NA other downstream 231419 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1523542 37542062 ~ 37543202 (+)
G973918 NA other downstream 1632584 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1812967 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 2001895 37866715 ~ 38045713 (+)

Expression


Co-expression Network