G972455 (LOC108238713)


Basic Information

Item Value
gene id G972455
gene name LOC108238713
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36026400 ~ 36026768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1107653
ggaaggtggatactgagaaccgggggtttcaaacaaggtgggagtcggagtatatgttcacgaaggtagctggaaaacctgtgtgtcttctgtgtggagaaagtgtggcggtactgaaagagtataatctgagacgacattatgaaacgaaacacgcagacaaaaacaagaaatctcgacaggctctgttcaaaaaagccaaatcacaaggccaggctgctgtcaaggccagttttattttggcagaagagatcgctaaatcagcccggccatttacggagggggatttcatcaaaaactgcatgattaaagttt

Function

NR:

description
PREDICTED: general transcription factor II-I repeat domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1107653 True 315 lncRNA 0.45 2 36026400 36026768

Neighbor

gene id symbol gene type direction distance location
LOC110535012 LOC106590147 coding upstream 6578 36012646 ~ 36019822 (+)
mlrn mlrn coding upstream 14883 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 76002 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 132609 35868265 ~ 35893791 (+)
LOC110535011 NA coding upstream 160317 35720089 ~ 35866083 (+)
LOC110535013 LOC105015730 coding downstream 38444 36065212 ~ 36075733 (+)
LOC110535630 LOC106578722 coding downstream 124312 36151080 ~ 36157644 (+)
LOC110535631 LOC106578690 coding downstream 138021 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 162656 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 204347 36231115 ~ 36233394 (+)
G972454 NA non-coding upstream 7846 36018229 ~ 36018554 (+)
G972427 LOC106578695 non-coding upstream 52790 35973031 ~ 35973610 (+)
G972271 NA non-coding upstream 145051 35881083 ~ 35881349 (+)
G972266 NA non-coding upstream 150724 35875476 ~ 35875676 (+)
G972458 NA non-coding downstream 3196 36029964 ~ 36030298 (+)
G972460 NA non-coding downstream 5382 36032150 ~ 36032396 (+)
G972462 NA non-coding downstream 9252 36036020 ~ 36036311 (+)
G972637 NA non-coding downstream 99310 36126078 ~ 36126302 (+)
G972644 NA non-coding downstream 103673 36130441 ~ 36130659 (+)
G970489 LOC106578645 other upstream 1504060 34516457 ~ 34522340 (+)
G970283 NA other upstream 1846352 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1855413 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2231339 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2421590 33604513 ~ 33604810 (+)
G972725 NA other downstream 223205 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1515328 37542062 ~ 37543202 (+)
G973918 NA other downstream 1624370 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1804753 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1993681 37866715 ~ 38045713 (+)

Expression


Co-expression Network