G972458


Basic Information

Item Value
gene id G972458
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36029964 ~ 36030298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1107656
CTATTTCCCCAATACAATGGCAATGTCTGTATTTCGCCAAATAACTCAGAATTGATGTCGAGCTCTGTGGTCATCAAACGCTAGCCTTTCAAATATCAGAAATTACACATTACTGTTGGAACTCTGAGGATGCCCCATTGTTTCCCTATGGGGAAATTCTACACGGACATGTCTGTCTATTTCGCCAAATTTCTCACaatgtgtatatttagattttttcagGTCAGACACCATTTTAATCAGgagaatctcctctttctaaTGATGTAAGTCTGGGCAGCGAGCTCGGTTGTCATCAAATGCTAGCCCTAAAATACCTTTTGCCCTTGGAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1107656 True 335 lncRNA 0.41 1 36029964 36030298

Neighbor

gene id symbol gene type direction distance location
LOC110535012 LOC106590147 coding upstream 10142 36012646 ~ 36019822 (+)
mlrn mlrn coding upstream 18447 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 79566 35943714 ~ 35950398 (+)
LOC110535623 LOC106578698 coding upstream 136173 35868265 ~ 35893791 (+)
LOC110535011 NA coding upstream 163881 35720089 ~ 35866083 (+)
LOC110535013 LOC105015730 coding downstream 34914 36065212 ~ 36075733 (+)
LOC110535630 LOC106578722 coding downstream 120782 36151080 ~ 36157644 (+)
LOC110535631 LOC106578690 coding downstream 134491 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 159126 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 200817 36231115 ~ 36233394 (+)
G972455 LOC108238713 non-coding upstream 3196 36026400 ~ 36026768 (+)
G972454 NA non-coding upstream 11410 36018229 ~ 36018554 (+)
G972427 LOC106578695 non-coding upstream 56354 35973031 ~ 35973610 (+)
G972271 NA non-coding upstream 148615 35881083 ~ 35881349 (+)
G972460 NA non-coding downstream 1852 36032150 ~ 36032396 (+)
G972462 NA non-coding downstream 5722 36036020 ~ 36036311 (+)
G972637 NA non-coding downstream 95780 36126078 ~ 36126302 (+)
G972644 NA non-coding downstream 100143 36130441 ~ 36130659 (+)
G972671 NA non-coding downstream 119550 36149848 ~ 36150047 (+)
G970489 LOC106578645 other upstream 1507624 34516457 ~ 34522340 (+)
G970283 NA other upstream 1849916 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1858977 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2234903 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2425154 33604513 ~ 33604810 (+)
G972725 NA other downstream 219675 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1511798 37542062 ~ 37543202 (+)
G973918 NA other downstream 1620840 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1801223 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1990151 37866715 ~ 38045713 (+)

Expression


Co-expression Network