XLOC_028745 (si:dkey-159a18.1)


Basic Information

Item Value
gene id XLOC_028745
gene name si:dkey-159a18.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20110921 ~ 20118468 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055717
GCAAGCTGTGCCATAAATCTTTCTTATTTCTTTACATAGGTATTGTAGGTATTTGTATAGTTATAGGTATTTTTCTGCTgattttgcagaaaaaaaacgaacacacaaacaaacaaacacaccgtGCAGCTCTATGACTCACTGTTAATGCTTGATTGCAGTTCTACTCTGTTTTGGATGCTGATGAAGACATGATCTTCATGCATGTGGACAACCCTGGAGGTGCAGTTTCATCTCTCCCCTATATCCTCTATCTCCATCCTGTCAGAACTGTAAAAGAGAAGTATCAGTATAATACACTGTAACAGCACCACCACTGATATTGTCAGTTTAACAATGTGGTGGCAGAACTTGTCGAGCGAGTTCCACTTTGTGCTGACATTTCATTAAACATCTCTTTACAAGTTGCTAGATTCTATTGAGTCAGTGTATATGCTATTCATCATTGAGTCTGGAGATCTTTGGAAGATCACTGGAAAGAGATAAGAGTGAGGATGGTGTTGTCTTTCAGTCACGCTACAGAAAATGCATGCAAATGCACCCCCATTGTATTTACATGCATTCATGACAGTACATAGCTCAAGTGAACATTTATCTTACTTCCCACCATGCTTTTGCATGTCAGTCTGTTTTTCACTGACCGTTTTATTCTCCATTTGCCTCATAACCCCGGTTAGATGCTTTTGTAGTgtgtttgaataatgatggcttgGGATGATCTCATCTCTTATCTCATCTAAGAGAAAGCTGTGTTGGCGGAGTGTTTATGTATGATGTGCTCTCAACTGATTACAGAAGACACATATTATGGGACAGTCTATGCCTCTGATGAACAAGGAATCCTGTACTCAAAGTCTCTGGAGCGCCACTTGTTTGGTGGGGAGGGGAAAAGTGACTTCACTAACATCACGTCTTTGAGAGGGGTATATCTGACCAACATACTGGAGGAAGGTGGATGCATTCGTTCAGTCATCTCATTCAACAGAGGGGGACGATGGAGATATCTGAAAAAGCCAGAGAATGTCGATTGTCCAGATATGTCGAAAAAGTGTAACCTGCACATCCATGGAGAGCACAGTCATTTTAGTGGAGTCACTCCCATGACGCCTAGCTCTGAACCTACAGCTATCGGTCTGGTCATCGGCCATGGGAGTGTTGGAGATTCCATTTCAGCAGCCCGCCCTGATGTATATGTGTCTAGGGATGGAGGTTACACATGGTGGGGAACTCTAAGAGGACCTCACCACTACAGCATACTGGACTCTGGAGGGCTAATAGTGGCTGTGGAGGCGCGCAGAGACAGAGGGATCAGCTCCATAAaGTTTTCCACAGATGAAGGGCAGTGTTGGAAGACATTTAATTTCACAGACCACCCGTTCTTTCTGGCAGGACTGGCATCAGAGCCTAGCAGCAGTACAATGAACATCAGTATTTTTGGCTACCGCCTAGATGACAATCATAAGCCTATGTGGGTAGCTGTCACCATAGACTTTGAGCACCTGCTCACTAGAGAGTGTAATGATCAGGATTATGTGACGTGGTTGGCACACTCCAACTACAGTTCTAACCCAAAAACAGATGGATGTCTCTTGGGCTATAAGGAGACATTTAGAAGACTTAAGACACTGTCTGCATGTAGAAATGGTAGAGGATATGTGGTCAGTAGACAGCAGAGTCCATGCATTTGCACCAGTGAGGACTTCATGTGCGACTATGGATTCTATTGGCATGAAAATAGCTCAGCGTGTCTCCCTCAGCCCGACTTTCTGAATCAAACCCAGGATTTTTGTTTGAATGTAGACCTGCAGACTACAGGATATCGCAGGATTCCCGGAGATAAATGTAAGGGGAGTTTCAGCCCTCCAAGAAATGAAGAGGCTCACCAAAAGCTTTGTGGGAATGTCACTTCCTCAGATTCACATACAGAGATACCACCAGCCATACTGGCTCTTATAGTGGTGTGTAGTTTGGGCATCATTTGTTTGGTTATTATAGCAGCTTACATGATCACTTCAAGAAGAATAAACTGTGGCCAAAGGTAAGGTCATTTGATAAAGCCTTGTCCAGCTTTTGTTTTATGTTACATCCATTTGAAACTATTGTCTGTATATTACATACTAAAGATTTCTCGTCAACTTCTGCCTCCTGCAGGTCGCCGGAATATAACTTTTCTGTTCTGCAAATCCAAGAAGACGACCTGTCCGTTAACAATGAAAGCACCCCCAATGGCAAACTAAACGGTTTCCAGGTCCAGGAGGACTCAGATGATGTGAGCTTGATCAAACAATAATATCATGCCTCCATTTAGTTAATGGCTATTGTAATAATTAACCTAAAAACCTACTTAATCTTCTTACACTCGTTATTCCaacctttgtgctttgttttttattttgtaggaagtacttttttaaaaataatttattgcatttgtttgcttttatttttctctatttttctttctttcttttttcttttcttttttggtctTCTTTAGGATCTCCTTGAATGAACAACATTTAAACTGTGGAAACTACTCAGGCTTTGAAAACAGGTGTTTGCAGGCAGATATGCTTCAAATAAATTTCAAGCCTAGTCACTGTAACTGGAAGATAAAACACCTGAAAATAATAGTGAACTGCATTTATCAACCTGAGCTCTTGTTTTGTCCTATCAAGTGTATTATGCAAGTATCTGAGGATAATGCATGTATCATTGAAAGTGAATTTACTTTCACCCTCTCTGTCTTTTGCACTGGACTCATTCATATTCCCTCAGGCTGCTGCTGGTATTACTCTTGAGCTTTGGGACTATGTATCTAGACAAGTCTACTGtttttattagtaaataaattaaaatgaatttaaaacaaacactgcattattcattattttgcaatCAACaatcat
>TCONS_00055718
GTGGATGCATTCGTTCAGTCATCTCATTCAACAGAGGGGGACGATGGAGATATCTGAAAAAGCCAGAGAATGTCGATTGTCCAGATATGTCGAAAAAGTGTAACCTGCACATCCATGGAGAGCACAGTCATTTTAGTGGAGTCACTCCCATGACGCCTAGCTCTGAACCTACAGCTATCGGTCTGGTCATCGGCCATGGGAGTGTTGGAGATTCCATTTCAGCAGCCCGCCCTGATGTATATGTGTCTAGGGATGGAGGTTACACATGGTGGGGAACTCTAAGAGGACCTCACCACTACAGCATACTGGACTCTGGAGGGCTAATAGTGGCTGTGGAGGCGCGCAGAGACAGAGGGATCAGCTCCATAAaGTTTTCCACAGATGAAGGGCAGTGTTGGAAGACATTTAATTTCACAGACCACCCGTTCTTTCTGGCAGGACTGGCATCAGAGCCTAGCAGCAGTACAATGAACATCAGTATTTTTGGCTACCGCCTAGATGACAATCATAAGCCTATGTGGGTAGCTGTCACCATAGACTTTGAGCACCTGCTCACTAGAGAGTGTAATGATCAGGATTATGTGACGTGGTTGGCACACTCCAACTACAGTTCTAACCCAAAAACAGATGGATGTCTCTTGGGCTATAAGGAGACATTTAGAAGACTTAAGACACTGTCTGCATGTAGAAATGGTAGAGGATATGTGGTCAGTAGACAGCAGAGTCCATGCATTTGCACCAGTGAGGACTTCATGTGCGACTATGGATTCTATTGGCATGAAAATAGCTCAGCGTGTCTCCCTCAGCCCGACTTTCTGAATCAAACCCAGGATTTTT

Function

symbol description
si:dkey-159a18.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-204 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000056145

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055717 False 2909 mRNA 0.41 9 20110921 20118468
TCONS_00055718 True 837 mRNA 0.47 6 20112260 20115570

Neighbor

gene id symbol gene type direction distance location
XLOC_028744 fam3c coding downstream 2088 20101992 ~ 20108833 (-)
XLOC_028743 dennd6b coding downstream 29300 20071128 ~ 20081621 (-)
XLOC_028742 atp6v1f coding downstream 47687 20049260 ~ 20063234 (-)
XLOC_028741 NA coding downstream 63037 20044867 ~ 20047884 (-)
XLOC_028740 zgc:193726 coding downstream 67437 20042807 ~ 20043484 (-)
XLOC_028746 NA coding upstream 4445 20122913 ~ 20124058 (-)
XLOC_028747 cep83 coding upstream 6395 20124863 ~ 20135919 (-)
XLOC_028748 lrrc17 coding upstream 22723 20141191 ~ 20156085 (-)
XLOC_028749 sinup coding upstream 57675 20176143 ~ 20177868 (-)
XLOC_028750 fgl2a coding upstream 60226 20178694 ~ 20181964 (-)
XLOC_028736 NA non-coding downstream 209788 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 571831 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 741136 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 non-coding downstream 1063366 19047466 ~ 19047555 (-)
XLOC_028756 BX248410.1 non-coding upstream 277581 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1473776 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1515544 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1537777 21656245 ~ 21657106 (-)

Expression


Co-expression Network