G972662


Basic Information

Item Value
gene id G972662
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36157813 ~ 36158831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1107870
catttcaattaacaggtgtgccttgttaaaagttaacttaatgcgtttgagacaatcagttgtgttgtgacaaggtagggttggtatacagaagatagccctattgggtaaaataccaagttcatatcatggcaagaacagctcaaataagcaaagagaaacaacagtccatcattactttaagacatgaaggtcagtcaatatggaaaatttcaagaactttgaaagtttcttaaagtgctgtcgcaaaaccatcaagtgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccggagGTATCTCTGCTGCatagaataagttcattagagttaccagcctcagaaattgccgCCCAAATAaaggcttcacagagttcaagtaacagacccatctcaacatcaactgttcagaagagactgcatgaatcaggcattcatggtggAATTGCtccaaagaaaccactgctaaaggacaccaataagaagaagggacattagaccggtggaaatttgtccattggtctgatgagtccaaatttgagatttttgcttccaaccactgtgtctttgtaagacgcagagtaggggaacagatgatctctgcatgtgtggttcatCACCGTAAagtatggaggaggtggtgtgatggtgctttcctggtgacactgtctgtgatttatttagaattcagggaaagtttaaccagcatggctaccacagcattctgcagcgatacgtcattccatctggtttgggcttagtgggactatcatttgtttttcaacaggaaaaggacccaaaatacacctccaggctgtgtcagggctatttgagcaagaaggaaagtgatgaagtgctgcatcagatgacctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggaccgcagagtggaggaaaagcagccaacaagtgctcagcatatgtgggaagcattccaggtgaagctggttcgaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1107870 True 1019 lncRNA 0.44 1 36157813 36158831

Neighbor

gene id symbol gene type direction distance location
LOC110535630 LOC106578722 coding upstream 169 36151080 ~ 36157644 (+)
LOC110535013 LOC105015730 coding upstream 82080 36065212 ~ 36075733 (+)
LOC110535012 LOC106590147 coding upstream 137991 36012646 ~ 36019822 (+)
mlrn mlrn coding upstream 146296 36006085 ~ 36011517 (+)
LOC110535625 NA coding upstream 207415 35943714 ~ 35950398 (+)
LOC110535631 LOC106578690 coding downstream 5958 36164789 ~ 36179098 (+)
LOC110535014 LOC106578720 coding downstream 30593 36189424 ~ 36191073 (+)
sox17 LOC106578689 coding downstream 72284 36231115 ~ 36233394 (+)
LOC110535634 LOC106578686 coding downstream 96392 36255223 ~ 36266074 (+)
LOC110535637 LOC106578684 coding downstream 185895 36344726 ~ 36461901 (+)
G972671 NA non-coding upstream 7766 36149848 ~ 36150047 (+)
G972644 NA non-coding upstream 27154 36130441 ~ 36130659 (+)
G972637 NA non-coding upstream 31511 36126078 ~ 36126302 (+)
G972462 NA non-coding upstream 121502 36036020 ~ 36036311 (+)
G972460 NA non-coding upstream 125417 36032150 ~ 36032396 (+)
G972663 NA non-coding downstream 167 36158998 ~ 36159369 (+)
G972688 NA non-coding downstream 22600 36181431 ~ 36181849 (+)
G972687 NA non-coding downstream 23244 36182075 ~ 36182289 (+)
G972698 NA non-coding downstream 35950 36194781 ~ 36195062 (+)
G972699 NA non-coding downstream 37012 36195843 ~ 36196149 (+)
G970489 LOC106578645 other upstream 1635473 34516457 ~ 34522340 (+)
G970283 NA other upstream 1977765 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1986826 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2362752 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2553003 33604513 ~ 33604810 (+)
G972725 NA other downstream 91142 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1383265 37542062 ~ 37543202 (+)
G973918 NA other downstream 1492307 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1672690 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1861618 37866715 ~ 38045713 (+)

Expression


Co-expression Network