XLOC_028746



Basic Information


Item Value
gene id XLOC_028746
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20122913 ~ 20124058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00058201
GAGCGCTCAGTCCTCTCCTCGCGCGCATCTTCTGAAGcatcaaacaaactaaattatttcTGTCACAACAGTCATGAAGTGGATCCTACTCGTGTTCGGCAGTGTGTGTCTACTGGATGTGGTTGAGGACTCGTTCGTGCACGGCAAGCGCAACGCGAGAACAGTGACTTTCTCTCGGACTGGCCGCGGTCAGTCGAGACGCAGACGGGACACCTGGACGACTGAAAAAGAGCGGTTCACCGAGTGCAATACTCCACTGTCGGTCAAAGACAGAGAGCTTCTGCGCAGCCACACACACGAGaagaaagaaactcttaaagatttGGA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00058201 True 327 lncRNA 0.52 2 20122913 20124058

Neighbor


gene id symbol gene type direction distance location
XLOC_028745 si:dkey-159a18.1 coding downstream 4445 20110921 ~ 20118468 (-)
XLOC_028744 fam3c coding downstream 14080 20101992 ~ 20108833 (-)
XLOC_028743 dennd6b coding downstream 41292 20071128 ~ 20081621 (-)
XLOC_028742 atp6v1f coding downstream 59679 20049260 ~ 20063234 (-)
XLOC_028741 NA coding downstream 75029 20044867 ~ 20047884 (-)
XLOC_028747 cep83 coding upstream 805 20124863 ~ 20135919 (-)
XLOC_028748 lrrc17 coding upstream 17133 20141191 ~ 20156085 (-)
XLOC_028749 sinup coding upstream 52085 20176143 ~ 20177868 (-)
XLOC_028750 fgl2a coding upstream 54636 20178694 ~ 20181964 (-)
XLOC_028751 gsap coding upstream 74236 20198294 ~ 20222182 (-)
XLOC_028736 NA non-coding downstream 221780 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 583823 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 753128 19268385 ~ 19369785 (-)
XLOC_028730 dre-mir-129-1 non-coding downstream 1075358 19047466 ~ 19047555 (-)
XLOC_028756 BX248410.1 non-coding upstream 271991 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1468186 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1509954 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1532187 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 2112300 22236358 ~ 22237294 (-)

Expression



Co-expression Network