XLOC_028747 (cep83)


Basic Information

Item Value
gene id XLOC_028747
gene name cep83
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20124863 ~ 20135919 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055719
CAAAATAAGAGATCACAGCCCTTATCCCGTTTATAAAACAcgagtcttttattttgaaaggcgACTCCGGCCGCCATCATCAAAACGTAACTGTGCGTCGCTGTCAGTGAGTGTTGGATCAGGTAACTTCACAACAGCTGATCAAATTGTTTACTTTTTTCCTTTAATGCACGactatattttagtattttgtacAGTTCTGAGCGCATGTTGTGTGTTGCGTTCAGCGAAGGTGTTTATTTACGAAATAAGTACATTGTGCATTGTTTATCAAGAACTGTTTGCATGACACTCCAAGTTTAAACACTGTATGCAATGACCTCCTCTCGCAACTAGCAAGAAATACATCTCTTGGGCTGTTTTAAATGCACGAGGCCGGCTTCCCCAGTGGCTTAGTTGCTTTGACAACATGGGCAGCCGTTATGTGTTTATGCTGGAGTGGATCTGTATCTACAACAGAGTAAATCACTGGAGACCCGTCTGAGCTTCACTTCTAATCACTTGAGAGCAGAGGAGCAAACAAGGACTCTTGTGCTGCACATGTAGTGATTAGATGATTTGTTCTTGCTCTTACAAGTGATATAAAACAGTCAGTCTTGATGAGATGTGGCTGCATCACTTGACTTTGGCTGTCTGAAGTGGAGTCATTTGTGCTGATTGAGATCTTTGTCTTTTTAAAGAGATCCCTTAAGGTTTTAGTGGTTTCAGAGGGAGGTATAAAATTTGTGCCTTTGTTCCCTTACTctttttcttctctctttctgCTATGGATAAGATGAACCCCCCAGCATTAGGGCAGGCATCTGCCCTGTTCCCCGATCTGGAGCCTCCTGGAGGAGTTGGGAAAGCCACAGTCCTTTTGGGTGGCTCTACGGGACTCACCAGCTCTGATATGGAGTTCCAGAAAATGCTCATTGATGAGCGTATGCGCTGTGAGAACCACAAGACCAACTATCAGACACTAAAAGTGGAACACACCAGaCTGCAGGATCAATACACGCGTGCACAGAATGAACTAAAACGCCTACTCAGTGATCGCCAAGTCACTCAGGAGAAACAGCAGCTTTTGTTGGCTGAGCTGAGAGGAGAACTGCTGGATAAAACACGAGATCTAGAGGAGCTCAAATTGCAGGTGCTGACCCCTCAGCGGCTGGAGCTCTTGAGAGCACAGGTGCAGCAGGAGTTGGAAGCTCCTATCAGAGAACGCTTCAACAAACTCCAGGAGGAGGCAGAGAATTACAGGTCAGAGTATAATAAGCTTCGTTATGACCTCACATTCCTCAAGTCTGAGTTTGATCACCAGAAAGAAGAACACGCTCGAGTACTGGAGGAGAGACGGATACGGCACGAAGCTGATGTGGCGCGACTGGAGCATGATAAGGAGGATCTGGCCACTCAGCTGCAGAGTGGAGACCCGGCACGGGATGGGAAGCGGGTTGAAGCCCTGCTGAGGGAGAAAGCTCAGCTCCACCAGCGGCTCAGAGGCCTGGAGGCAGAGGTCACTGAACTCAGAGCAGAGAGAAATAACTCTGGTGCTCAAGCTGAAAATGTACAGCGGATACAAATCCGACAGCTGGCCGAATCACAGGCTGCAGTAAAAGCCCTGGAGGCTGAGAAGCAATCTATTCGTATGCAGTTGGACAGGACGGAAAGTGAACTTCGTTTATCTCAGGAACAAAACACACTCCTCACAGGCAAACTGCACAAAGCTGAGAGAGAGATCAACTCGCTCAACAGTCAGGTTGAAGAGATGAAGCACACACACAAGCTGGAGTTAAGTAATGTAAAACTAGAGTGTGTTCGATCTAAAGGAGAACTAGAACGAGAAAGAGATATGCTTCAGTGCCAAGTAGAGGGTCTGCAGTCAGATATTGAGGTCATGAAATCAGCGCTGGAGAGAAATAAAGAACTGATATCTGAAAAGGAGCGTGAAATGGTACGCAGGGTTCAGGCCGCAAGAGAGGAGGAAATACACAAGATGGCCACCCTTCAGGAAGAGAAGCTGGAGTTAGAGAATCGTTTGTCTGAGCTTGAACAGCAGAAAGCTCTTCAGGAAGTGACAGGAAACTCGCAGAAGGAAGAGTGGGAGGAGCGTCTCCGTGCTGCACAGCTCGGGGAGGAGTCTGTTCGTAAAGAACTGCAAAACCTGAGAACAAAGGTGCAGCAGCAGGGCCAACAGTTGGAGGAGCTGGAGACTTTGAAAGCAGAAAATGCAGACCTGAGACAACAAATAGCTGAGCTCAACTTACAGGTAGGAACCCTTTCTCACTCTGAGAGTGAGTTgctggacaccaacaacagactGAGAGAAAGTCTGGAGCGTGTGAGAGAGGACCTGCGCAGTGCTCGAACACAAATGGAACGGACCCAACAGGAAGCCGAGAGGTTGGTGGAGGAAAGGCGAGTTGAATGGTTGGAGGAGAAACACAAGCTGCAAGACATAGAAGCAGAACTACGGGAGAAATACAGCCAGGCCAAAGAGCGCCTACAGAGGGCAGCATTTGCTCAGAAAAAGAGGAAAACAATGACTGAACTGAAAGAAAACAAACTCAAAGACAAGATTCAGCTCCTGGAAGCCAAGATAGCAGAACTTGAAATTGAAGCAAGTGCAGAAAAGAAGAAATCCTCATATTCTGAAGAGCATGCTCAGCTCAGCAAGCGTTTAAGGGAGCTGCAGAGGAGGCACAATGAGTTTCGCCGACTGTTGCTGGGCAACCAGATGACCTCCTCCACCCCCCTGGCCCAATCCCTCCTCATCCCGAACGAATCCATCTTCTCAAACATACAGGAGGAGCAGCACCAGAGGGAGTTGTGTGTGTTGCGGAGACGCTTAGAAGAGCTAGAAAACAGTCAGCAACAGCAGCTGGAAGAGCTTGCCGCTCCTCTggacagagatagagagagactGTCAAGCCCACGGGACGCCCTTCCAGACCTTTCTTAACCGCTACCTGTGTAATTATGTTTActctgtgccaaaaaaaaaaaatcggagaTACTGTGACATTTACTGTGACATTTTCCTTTAAATTACTCCTGGTGCTCTGCAACAGTAAAGGTCAgagatgttttaataaaaacctgttgcaatatttataatttattggtctgatgatattttttctaacTGGTTGAGAGGGTGGGTTCTTAAAGTTTACATAAAGTATAGCAgttcttgttgtacatattgaaaATGATTTGTAACAAGAAGCCATGTatgatattttgtttgtttgttccttaGAAGACCTTTCAAGtccaaatatacattttataaagaaaaggaaacaaaacaaataaaatgatttgTGTAAACCTGAGGCTCATCTCTCAAAGTAAATTTTACAACGGAGTGACTGGTTTTAATGGACATTTGTGATAAATTAATTCTGAAAAGTATGTCTCTAAAAGCACTCAGCCATGAAACATGGttttaataaagattttttaaataattgtgccTCCTCTTGGTTTCTTATTTGCCTTTGTTTGAATAATGAGTAAACTATGGATATGGaaatatgcatgcatgcatcaatcaatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatatatgggaaaattgaattgaattaaaaggtGTTTTAGTCAAGTGGCTGTTAAAAATTTAGCGAGCCTATGTTGACAGTATAAGTTCAAAGTATACTTCTTTGTGCATGCATCATTGAACATGCAGCATTTCAAAGTAGCATAAGGCTATGCTCTATTTACTTGCATGTGCATGTTGTAAGCAGGCCCTCATGTACTGCATAATTAAATAGCACACTTAC
>TCONS_00055720
TGTGCTTATTAGCAAATAGCTGAGCTCAACTTACAGGTAGGAACCCTTTCTCACTCTGAGAGTGAGTTgctggacaccaacaacagactGAGAGAAAGTCTGGAGCGTGTGAGAGAGGACCTGCGCAGTGCTCGAACACAAATGGAACGGACCCAACAGGAAGCCGAGAGGTTGGTGGAGGAAAGGCGAGTTGAATGGTTGGAGGAGAAACACAAGCTGCAAGACATAGAAGCAGAACTACGGGAGAAATACAGCCAGGCCAAAGAGCGCCTACAGAGGGCAGCATTTGCTCAGAAAAAGAGGAAAACAATGACTGAACTGAAAGAAAACAAACTCAAAGACAAGATTCAGCTCCTGGAAGCCAAGATAGCAGAACTTGAAATTGAAGCAAGTGCAGAAAAGAAGTAGGATacttttgtttgcatattgcttcATACATTCAAAACTATCTAGAGGTTATATTTtagtcaaataaacaataaaaaattatactttgctcatttattttaagttatttttaaacaattgatttaaatatattgttattaattacattcaaaatgcacagtaaaatattaaattaaatatttacataaatgtgctgttttattagtgtttttaatGTATCTTTTAGGAAATCCTCATATTCTG
>TCONS_00055721
GAGCAAACAAGGACTCTTGTGCTGCACATGTAGTGATTAGATGATTTGTTCTTGCTCTTACAAGTGATATAAAACAGTCAGTCTTGATGAGATGTGGCTGCATCACTTGACTTTGGCTGTCTGAAGTGGAGTCATTTGTGCTGATTGAGATCTTTGTCTTTTTAAAGAGATCCCTTAAGGTTTTAGTGGTTTCAGAGGGAGGTATAAAATTTGTGCCTTTGTTCCCTTACTctttttcttctctctttctgCTATGGATAAGATGAACCCCCCAGCATTAGGGCAGGCATCTGCCCTGTTCCCCGATCTGGAGCCTCCTGGAGGAGTTGGGAAAGCCACAGTCCTTTTGGGTGGCTCTACGGGACTCACCAGCTCTGATATGGAGTTCCAGAAAATGCTCATTGATGAGCGTATGCGCTGTGAGAACCACAAGACCAACTATCAGACACTAAAAGTGGAACACACCAGaCTGCAGGATCAATACACGCGTGCACAGAATGAACTAAAACGCCTACTCAGTGATCGCCAAGTCACTCAGGAGAAACAGCAGCTTTTGTTGGCTGAGCTGAGAGGAGAACTGCTGGATAAAACACGAGATCTAGAGGAGCTCAAATTGCAGGTGCTGACCCCTCAGCGGCTGGAGCTCTTGAGAGCACAGGTGCAGCAGGAGTTGGAAGCTCCTATCAGAGAACGCTTCAACAAACTCCAGGAGGAGGCAGAGAATTACAGGTCAGAGTATAATAAGCTTCGTTATGACCTCACATTCCTCAAGTCTGAGTTTGATCACCAGAAAGAAGAACACGCTCGAGTACTGGAGGAGAGACGGATACGGCACGAAGCTGATGTGGCGCGACTGGAGCATGATAAGGAGGATCTGGCCACTCAGCTGCAGAGTGGAGACCCGGCACGGGATGGGAAGCGGGTTGAAGCCCTGCTGAGGGAGAAAGCTCAGCTCCACCAGCGGCTCAGAGGCCTGGAGGCAGAGGTCACTGAACTCAGAGCAGAGAGAAATAACTCTGGTGCTCAAGCTGAAAATGTACAGCGGATACAAATCCGACAGCTGGCCGAATCACAGGCTGCAGTAAAAGCCCTGGAGGCTGAGAAGCAATCTATTCGTATGCAGTTGGACAGGACGGAAAGTGAACTTCGTTTATCTCAGGAACAAAACACACTCCTCACAGGCAAACTGCACAAAGCTGAGAGAGAGATCAACTCGCTCAACAGTCAGGTTGAAGAGATGAAGCACACACACAAGCTGGAGTTAAGTAATGTAAAACTAGAGTGTGTTCGATCTAAAGGAGAACTAGAACGAGAAAGAGATATGCTTCAGTGCCAAGTAGAGGGTCTGCAGTCAGATATTGAGGTCATGAAATCAGCGCTGGAGAGAAATAAAGAACTGATATCTGAAAAGGAGCGTGAAATGGTACGCAGGGTTCAGGCCGCAAGAGAGGAGGAAATACACAAGATGGCCACCCTTCAGGAAGAGAAGCTGGAGTTAGAGAATCGTTTGTCTGAGCTTGAACAGCAGAAAGCTCTTCAGGAAGTGACAGGAAACTCGCAGAAGGAAGAGTGGGAGGAGCGTCTCCGTGCTGCACAGCTCGGGGAGGAGTCTGTTCGTAAAGAACTGCAAAACCTGAGAACAAAGGTGCAGCAGCAGGGCCAACAGTTGGAGGAGCTGGAGACTTTGAAAGCAGAAAATGCAGACCTGAGACAACAAATAGCTGAGCTCAACTTACAGGTAGGAACCCTTTCTCACTCTGAGAGTGAGTTgctggacaccaacaacagactGAGAGAAAGTCTGGAGCGTGTGAGAGAGGACCTGCGCAGTGCTCGAACACAAATGGAACGGACCCAACAGGAAGCCGAGAGGTTGGTGGAGGAAAGGCGAGTTGAATGGTTGGAGGAGAAACACAAGCTGCAAGACATAGAAGCAGAACTACGGGAGAAATACAGCCAGGCCAAAGAGCGCCTACAGAGGGCAGCATTTGCTCAGAAAAAGAGGAAAACAATGACTGAACTGAAAGAAAACAAACTCAAAGACAAGATTCAGCTCCTGGAAGCCAAGATAGCAGAACTTGAAATTGAAGCAAGTGCAGAAAAGAA

Function

symbol description
cep83 Acts upstream of or within cilium assembly. Predicted to be located in centriole. Is expressed in olfactory placode; post-vent region; and pronephric duct. Human ortholog(s) of this gene implicated in nephronophthisis 18. Orthologous to human CEP83 (centrosomal protein 83).

GO:

id name namespace
GO:0048278 vesicle docking biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-110321-1 Acts upstream of or within cilium assembly. Predicted to be located in centriole. Is expressed in olfactory placode; post-vent region; and pronephric duct. Human ortholog(s) of this gene implicated in nephronophthisis 18. Orthologous to human CEP83 (centrosomal protein 83).

Ensembl:

ensembl_id ENSDARG00000101236

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055719 False 3874 mRNA 0.44 15 20124863 20135919
TCONS_00055720 False 651 lncRNA 0.37 3 20126188 20127945
TCONS_00055721 True 2106 mRNA 0.48 13 20126435 20135406

Neighbor

gene id symbol gene type direction distance location
XLOC_028746 NA coding downstream 805 20122913 ~ 20124058 (-)
XLOC_028745 si:dkey-159a18.1 coding downstream 6395 20110921 ~ 20118468 (-)
XLOC_028744 fam3c coding downstream 16030 20101992 ~ 20108833 (-)
XLOC_028743 dennd6b coding downstream 43242 20071128 ~ 20081621 (-)
XLOC_028742 atp6v1f coding downstream 61629 20049260 ~ 20063234 (-)
XLOC_028748 lrrc17 coding upstream 5272 20141191 ~ 20156085 (-)
XLOC_028749 sinup coding upstream 40224 20176143 ~ 20177868 (-)
XLOC_028750 fgl2a coding upstream 42775 20178694 ~ 20181964 (-)
XLOC_028751 gsap coding upstream 62375 20198294 ~ 20222182 (-)
XLOC_028752 stk38l coding upstream 88180 20224099 ~ 20235904 (-)
XLOC_028741 NA non-coding downstream 76979 20044867 ~ 20047884 (-)
XLOC_028736 NA non-coding downstream 223730 19900015 ~ 19901133 (-)
XLOC_028733 NA non-coding downstream 585773 19534461 ~ 19539090 (-)
XLOC_028731 NA non-coding downstream 755078 19268385 ~ 19369785 (-)
XLOC_028756 BX248410.1 non-coding upstream 260130 20396049 ~ 20396170 (-)
XLOC_028761 NA non-coding upstream 1456325 21592244 ~ 21628998 (-)
XLOC_028762 NA non-coding upstream 1498093 21634012 ~ 21647992 (-)
XLOC_028764 BX569790.2 non-coding upstream 1520326 21656245 ~ 21657106 (-)
XLOC_028767 BX537162.1 non-coding upstream 2100439 22236358 ~ 22237294 (-)

Expression


Co-expression Network