Gene
RNA
| Item | Value |
|---|---|
| gene id | G972744 |
| gene name | vps41 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 36292387 ~ 36295696 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| vps41 | Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex). |
| description |
|---|
| vacuolar protein sorting-associated protein 41 homolog isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1107960 | True | 1493 | lncRNA | 0.46 | 11 | 36292387 | 36295696 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535634 | LOC106578686 | coding | upstream | 26313 | 36255223 ~ 36266074 (+) |
| sox17 | LOC106578689 | coding | upstream | 58993 | 36231115 ~ 36233394 (+) |
| LOC110535014 | LOC106578720 | coding | upstream | 101314 | 36189424 ~ 36191073 (+) |
| LOC110535631 | LOC106578690 | coding | upstream | 113289 | 36164789 ~ 36179098 (+) |
| LOC110535630 | LOC106578722 | coding | upstream | 134743 | 36151080 ~ 36157644 (+) |
| LOC110535637 | LOC106578684 | coding | downstream | 49030 | 36344726 ~ 36461901 (+) |
| LOC110535639 | LOC106578683 | coding | downstream | 179806 | 36475502 ~ 36489512 (+) |
| c-myc | LOC106578682 | coding | downstream | 237237 | 36532933 ~ 36535742 (+) |
| LOC110536619 | NA | coding | downstream | 249702 | 36545398 ~ 36584763 (+) |
| LOC118937471 | NA | coding | downstream | 411756 | 36707452 ~ 36707506 (+) |
| G972741 | NA | non-coding | upstream | 879 | 36290910 ~ 36291508 (+) |
| G972727 | NA | non-coding | upstream | 39603 | 36252580 ~ 36252784 (+) |
| G972699 | NA | non-coding | upstream | 96238 | 36195843 ~ 36196149 (+) |
| G972698 | NA | non-coding | upstream | 97325 | 36194781 ~ 36195062 (+) |
| G972687 | NA | non-coding | upstream | 110098 | 36182075 ~ 36182289 (+) |
| G972742 | vps41 | non-coding | downstream | 6401 | 36302097 ~ 36302909 (+) |
| G973455 | NA | non-coding | downstream | 537099 | 36832795 ~ 36833926 (+) |
| G973611 | NA | non-coding | downstream | 789146 | 37084842 ~ 37086656 (+) |
| G973659 | NA | non-coding | downstream | 835209 | 37130905 ~ 37134701 (+) |
| G973716 | NA | non-coding | downstream | 935989 | 37231685 ~ 37231898 (+) |
| G972725 | NA | other | upstream | 41801 | 36249973 ~ 36250586 (+) |
| G970489 | LOC106578645 | other | upstream | 1770047 | 34516457 ~ 34522340 (+) |
| G970283 | NA | other | upstream | 2112339 | 34179703 ~ 34180048 (+) |
| G970054 | LOC106578636 | other | upstream | 2121400 | 34163816 ~ 34170987 (+) |
| G969752 | LOC106578632 | other | upstream | 2497326 | 33794375 ~ 33795061 (+) |
| LOC110535658 | NA | other | downstream | 1246400 | 37542062 ~ 37543202 (+) |
| G973918 | NA | other | downstream | 1355442 | 37651138 ~ 37679368 (+) |
| lztfl1 | LOC106590188 | other | downstream | 1535825 | 37813177 ~ 37835340 (+) |
| LOC110535015 | LOC106578726 | other | downstream | 1724753 | 37866715 ~ 38045713 (+) |
| G974184 | NA | other | downstream | 1762102 | 38057798 ~ 38063100 (+) |
