G972742 (vps41)


Basic Information

Item Value
gene id G972742
gene name vps41
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 36302097 ~ 36302909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1107958
TTCCACATAACGGCTAGGAAGGTCTCTCAACTCTGTGTGGCCCCTCTCCTTCACAACACAGATCTTAATAGAGGAGCCCCAACCGATGATGAGGGTGGAGTTGTCTTTCCAGCACAGACTGCAGGGGTACATATCAGGCCGCAGGCTGACGTTATCCCGCAGGACGTTGGTGATTCGCTGTTTGGTGCTGATGTCATAAATCTTCACACCCATATTGTTGGCCCAGGCGATGAGATTGGCCCTCCATTGGACGTTAGTGATGGTGCCCTCCCCCTCGTGCAGAGTGGACGTCTTCCAGCGGTTCAGCCAGTTCTTCTCGTACAGCAGCAGCTTGGGAAGGcaacattaaaaataaaaacacacatcaGAATCACGTGTGTCACCAATGATATCCAAATCAGCACCAGTTTCAAAAACAGACAAACAATCGTGTCCTTGGAGCGGTGGTTTGTGGTTCTGTATTTCCACcaccagagggcagtagagcacaAGGACAGGAGGGTCGTCTTCTGTGTCAGTGGGCCACCCAGAGCAGGAGGATTGTGTTTCACTTTATCATAAACGTAAAGTAAACGGACACAGTGTTTTC

Function

symbol description
vps41 Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex).

NR:

description
vacuolar protein sorting-associated protein 41 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1107958 True 589 lncRNA 0.50 2 36302097 36302909

Neighbor

gene id symbol gene type direction distance location
LOC110535634 LOC106578686 coding upstream 36023 36255223 ~ 36266074 (+)
sox17 LOC106578689 coding upstream 68703 36231115 ~ 36233394 (+)
LOC110535014 LOC106578720 coding upstream 111024 36189424 ~ 36191073 (+)
LOC110535631 LOC106578690 coding upstream 122999 36164789 ~ 36179098 (+)
LOC110535630 LOC106578722 coding upstream 144453 36151080 ~ 36157644 (+)
LOC110535637 LOC106578684 coding downstream 41817 36344726 ~ 36461901 (+)
LOC110535639 LOC106578683 coding downstream 172593 36475502 ~ 36489512 (+)
c-myc LOC106578682 coding downstream 230024 36532933 ~ 36535742 (+)
LOC110536619 NA coding downstream 242489 36545398 ~ 36584763 (+)
LOC118937471 NA coding downstream 404543 36707452 ~ 36707506 (+)
G972744 vps41 non-coding upstream 6401 36292387 ~ 36295696 (+)
G972741 NA non-coding upstream 10589 36290910 ~ 36291508 (+)
G972727 NA non-coding upstream 49313 36252580 ~ 36252784 (+)
G972699 NA non-coding upstream 105948 36195843 ~ 36196149 (+)
G972698 NA non-coding upstream 107035 36194781 ~ 36195062 (+)
G973455 NA non-coding downstream 529886 36832795 ~ 36833926 (+)
G973611 NA non-coding downstream 781933 37084842 ~ 37086656 (+)
G973659 NA non-coding downstream 827996 37130905 ~ 37134701 (+)
G973716 NA non-coding downstream 928776 37231685 ~ 37231898 (+)
G973721 NA non-coding downstream 933885 37236794 ~ 37237025 (+)
G972725 NA other upstream 51511 36249973 ~ 36250586 (+)
G970489 LOC106578645 other upstream 1779757 34516457 ~ 34522340 (+)
G970283 NA other upstream 2122049 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 2131110 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2507036 33794375 ~ 33795061 (+)
LOC110535658 NA other downstream 1239187 37542062 ~ 37543202 (+)
G973918 NA other downstream 1348229 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1528612 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 1717540 37866715 ~ 38045713 (+)
G974184 NA other downstream 1754889 38057798 ~ 38063100 (+)

Expression


Co-expression Network